2d47: Difference between revisions

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[[Image:2d47.gif|left|200px]]


{{Structure
==MOLECULAR STRUCTURE OF A COMPLETE TURN OF A-DNA==
|PDB= 2d47 |SIZE=350|CAPTION= <scene name='initialview01'>2d47</scene>, resolution 2.000&Aring;
<StructureSection load='2d47' size='340' side='right'caption='[[2d47]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=DC:2&#39;-DEOXYCYTIDINE-5&#39;-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2&#39;-DEOXYGUANOSINE-5&#39;-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene>
<table><tr><td colspan='2'>[[2d47]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D47 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D47 FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
|GENE=  
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SPM:SPERMINE'>SPM</scene></td></tr>
|DOMAIN=
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d47 OCA], [https://pdbe.org/2d47 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d47 RCSB], [https://www.ebi.ac.uk/pdbsum/2d47 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d47 ProSAT]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d47 OCA], [http://www.ebi.ac.uk/pdbsum/2d47 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2d47 RCSB]</span>
__TOC__
}}
</StructureSection>
 
[[Category: Large Structures]]
'''MOLECULAR STRUCTURE OF A COMPLETE TURN OF A-DNA'''
[[Category: Aymami J]]
 
[[Category: Coll M]]
 
[[Category: Fernandez-Forner D]]
==Overview==
[[Category: Fita I]]
We have determined the crystal structure of the dodecamer d(CCCCCGCGGGGG), showing for the first time a complete turn of A-DNA. It has average structural parameters similar to those determined in fibres. Nevertheless it shows a considerable local variation in structure which is in part associated with the presence of a bound spermine molecule. We conclude that the local DNA conformation does not only depend on the base sequence, but may be strongly modified upon interaction with other molecules. In particular, the CpG sequence, which is found in hypersensitive regions of the genome, appears to be able to easily change its conformation under external influences.
[[Category: Huynh-Dinh T]]
 
[[Category: Igolen J]]
==About this Structure==
[[Category: Subirana JA]]
2D47 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D47 OCA].
[[Category: Verdaguer N]]
 
==Reference==
Molecular structure of a complete turn of A-DNA., Verdaguer N, Aymami J, Fernandez-Forner D, Fita I, Coll M, Huynh-Dinh T, Igolen J, Subirana JA, J Mol Biol. 1991 Sep 20;221(2):623-35. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/1920437 1920437]
[[Category: Protein complex]]
[[Category: Aymami, J.]]
[[Category: Coll, M.]]
[[Category: Fernandez-Forner, D.]]
[[Category: Fita, I.]]
[[Category: Huynh-Dinh, T.]]
[[Category: Igolen, J.]]
[[Category: Subirana, J A.]]
[[Category: Verdaguer, N.]]
[[Category: a-dna]]
[[Category: double helix]]
 
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Retrieved from "https://proteopedia.org/2d47"