2dpd: Difference between revisions

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[[Image:2dpd.jpg|left|200px]]


{{Structure
==Crystal structure of the Replication Termination Protein in complex with a pseudosymmetric B-site==
|PDB= 2dpd |SIZE=350|CAPTION= <scene name='initialview01'>2dpd</scene>, resolution 3.17&Aring;
<StructureSection load='2dpd' size='340' side='right'caption='[[2dpd]], [[Resolution|resolution]] 3.17&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=DA:2&#39;-DEOXYADENOSINE-5&#39;-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DC:2&#39;-DEOXYCYTIDINE-5&#39;-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2&#39;-DEOXYGUANOSINE-5&#39;-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5&#39;-MONOPHOSPHATE'>DT</scene>
<table><tr><td colspan='2'>[[2dpd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DPD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DPD FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.17&#8491;</td></tr>
|GENE= rtp ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dpd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dpd OCA], [https://pdbe.org/2dpd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dpd RCSB], [https://www.ebi.ac.uk/pdbsum/2dpd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dpd ProSAT]</span></td></tr>
|DOMAIN=
</table>
|RELATEDENTRY=[[1f4k|1F4K]], [[1bm9|1BM9]], [[1j0r|1J0R]]
== Function ==
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dpd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dpd OCA], [http://www.ebi.ac.uk/pdbsum/2dpd PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2dpd RCSB]</span>
[https://www.uniprot.org/uniprot/RTP_BACSU RTP_BACSU] Plays a role in DNA replication and termination (fork arrest mechanism). Two dimers of rtp bind to the two inverted repeat regions (IRI and IRII) present in the termination site. The binding of each dimer is centered on an 8 bp direct repeat.
}}


'''Crystal structure of the Replication Termination Protein in complex with a pseudosymmetric B-site'''
==See Also==
 
*[[Replication Termination Protein|Replication Termination Protein]]
 
__TOC__
==About this Structure==
</StructureSection>
2DPD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DPD OCA].
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Vivian, J P.]]
[[Category: Vivian JP]]
[[Category: Wilce, J.]]
[[Category: Wilce J]]
[[Category: Wilce, M C.J.]]
[[Category: Wilce MCJ]]
[[Category: fork arrest mechanism]]
[[Category: replication termination]]
[[Category: winged-helix protein-dna complex]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:37:36 2008''
Retrieved from "https://proteopedia.org/2dpd"