2idf: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(11 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2idf.jpg|left|200px]]


{{Structure
==P. aeruginosa azurin N42C/M64E double mutant, BMME-linked dimer==
|PDB= 2idf |SIZE=350|CAPTION= <scene name='initialview01'>2idf</scene>, resolution 2.25&Aring;
<StructureSection load='2idf' size='340' side='right'caption='[[2idf]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
|SITE= <scene name='pdbsite=AC1:Cu+Binding+Site+For+Residue+A+129'>AC1</scene>, <scene name='pdbsite=AC2:Cu+Binding+Site+For+Residue+B+129'>AC2</scene>, <scene name='pdbsite=AC3:Ni+Binding+Site+For+Residue+A+301'>AC3</scene>, <scene name='pdbsite=AC4:Ni+Binding+Site+For+Residue+B+302'>AC4</scene>, <scene name='pdbsite=AC5:144+Binding+Site+For+Residue+A+203'>AC5</scene>, <scene name='pdbsite=AC6:144+Binding+Site+For+Residue+B+204'>AC6</scene> and <scene name='pdbsite=AC7:Opp+Binding+Site+For+Residue+A+205'>AC7</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=144:TRIS-HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=OPP:1-[PYRROL-1-YL-2,5-DIONE-METHOXYMETHYL]-PYRROLE-2,5-DIONE'>OPP</scene>
<table><tr><td colspan='2'>[[2idf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IDF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IDF FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
|GENE= azu ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 Pseudomonas aeruginosa])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=144:TRIS-HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=OPP:1-[PYRROL-1-YL-2,5-DIONE-METHOXYMETHYL]-PYRROLE-2,5-DIONE'>OPP</scene></td></tr>
|DOMAIN=
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2idf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2idf OCA], [https://pdbe.org/2idf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2idf RCSB], [https://www.ebi.ac.uk/pdbsum/2idf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2idf ProSAT]</span></td></tr>
|RELATEDENTRY=[[1jvo|1jvo]]
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2idf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2idf OCA], [http://www.ebi.ac.uk/pdbsum/2idf PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2idf RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/AZUR_PSEAE AZUR_PSEAE] Transfers electrons from cytochrome c551 to cytochrome oxidase.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/id/2idf_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2idf ConSurf].
<div style="clear:both"></div>


'''P. aeruginosa azurin N42C/M64E double mutant, BMME-linked dimer'''
==See Also==
 
*[[Azurin 3D structures|Azurin 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
2IDF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IDF OCA].
[[Category: Large Structures]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Single protein]]
[[Category: Canters GW]]
[[Category: Canters, G W.]]
[[Category: Cavazzini D]]
[[Category: Cavazzini, D.]]
[[Category: Einsle O]]
[[Category: Einsle, O.]]
[[Category: Hoffmann M]]
[[Category: Hoffmann, M.]]
[[Category: Rossi GL]]
[[Category: Jongh, T E.de.]]
[[Category: Ubbink M]]
[[Category: Rossi, G L.]]
[[Category: De Jongh TE]]
[[Category: Ubbink, M.]]
[[Category: cupredoxin]]
[[Category: electron transfer]]
[[Category: electron transport]]
[[Category: protein crosslinking]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:42:47 2008''