2im5: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(12 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2im5.jpg|left|200px]]


{{Structure
==Crystal structure of Nicotinate phosphoribosyltransferase from Porphyromonas Gingivalis==
|PDB= 2im5 |SIZE=350|CAPTION= <scene name='initialview01'>2im5</scene>, resolution 2.20&Aring;
<StructureSection load='2im5' size='340' side='right'caption='[[2im5]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND=  
<table><tr><td colspan='2'>[[2im5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IM5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IM5 FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
|GENE= pncB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=837 Porphyromonas gingivalis])
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2im5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2im5 OCA], [https://pdbe.org/2im5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2im5 RCSB], [https://www.ebi.ac.uk/pdbsum/2im5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2im5 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2im5 TOPSAN]</span></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01401 PncB_like], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK05321 PRK05321]</span>
</table>
|RELATEDENTRY=
== Function ==
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2im5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2im5 OCA], [http://www.ebi.ac.uk/pdbsum/2im5 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2im5 RCSB]</span>
[https://www.uniprot.org/uniprot/Q7MXV0_PORGI Q7MXV0_PORGI] Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP.[HAMAP-Rule:MF_00570]
}}
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/im/2im5_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2im5 ConSurf].
<div style="clear:both"></div>


'''Crystal structure of Nicotinate phosphoribosyltransferase from Porphyromonas Gingivalis'''
==See Also==
 
*[[Phosphoribosyltransferase 3D structures|Phosphoribosyltransferase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
2IM5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IM5 OCA].
[[Category: Large Structures]]
[[Category: Porphyromonas gingivalis]]
[[Category: Porphyromonas gingivalis]]
[[Category: Single protein]]
[[Category: Almo SC]]
[[Category: Almo, S C.]]
[[Category: Burley SK]]
[[Category: Burley, S K.]]
[[Category: Fedorov AA]]
[[Category: Fedorov, A A.]]
[[Category: Fedorov EV]]
[[Category: Fedorov, E V.]]
[[Category: Sauder JM]]
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
[[Category: Sauder, J M.]]
[[Category: new york structural genomix research consortium]]
[[Category: nysgxrc]]
[[Category: phosphoribosyltransferase]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:45:59 2008''

Latest revision as of 09:03, 21 February 2024

Crystal structure of Nicotinate phosphoribosyltransferase from Porphyromonas Gingivalis

2im5, resolution 2.20Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=2im5&oldid=4062035"