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| [[Image:2jpz.gif|left|200px]]
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| {{Structure
| | ==Human telomere DNA quadruplex structure in K+ solution hybrid-2 form== |
| |PDB= 2jpz |SIZE=350|CAPTION= <scene name='initialview01'>2jpz</scene>
| | <StructureSection load='2jpz' size='340' side='right'caption='[[2jpz]]' scene=''> |
| |SITE=
| | == Structural highlights == |
| |LIGAND= <scene name='pdbligand=DA:2'-DEOXYADENOSINE-5'-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DG:2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5'-MONOPHOSPHATE'>DT</scene>
| | <table><tr><td colspan='2'>[[2jpz]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JPZ FirstGlance]. <br> |
| |ACTIVITY=
| | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| |GENE=
| | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jpz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpz OCA], [https://pdbe.org/2jpz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jpz RCSB], [https://www.ebi.ac.uk/pdbsum/2jpz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jpz ProSAT]</span></td></tr> |
| |DOMAIN=
| | </table> |
| |RELATEDENTRY=
| | __TOC__ |
| |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jpz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpz OCA], [http://www.ebi.ac.uk/pdbsum/2jpz PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2jpz RCSB]</span>
| | </StructureSection> |
| }}
| | [[Category: Large Structures]] |
| | | [[Category: Carver M]] |
| '''Structure of the hybrid-2 type intramolecular human telomeric G-quadruplex'''
| | [[Category: Dai J]] |
| | | [[Category: Jones R]] |
| | | [[Category: Punchihewa C]] |
| ==Overview==
| | [[Category: Yang D]] |
| Formation of the G-quadruplex in the human telomeric sequence can inhibit the activity of telomerase, thus the intramolecular telomeric G-quadruplexes have been considered as an attractive anticancer target. Information of intramolecular telomeric G-quadruplex structures formed under physiological conditions is important for structure-based drug design. Here, we report the first structure of the major intramolecular G-quadruplex formed in a native, non-modified human telomeric sequence in K(+) solution. This is a hybrid-type mixed parallel/antiparallel-G-stranded G-quadruplex, one end of which is covered by a novel T:A:T triple capping structure. This structure (Hybrid-2) and the previously reported Hybrid-1 structure differ in their loop arrangements, strand orientations and capping structures. The distinct capping structures appear to be crucial for the favored formation of the specific hybrid-type intramolecular telomeric G-quadruplexes, and may provide specific binding sites for drug targeting. Our study also shows that while the hybrid-type G-quadruplexes appear to be the major conformations in K(+) solution, human telomeric sequences are always in equilibrium between Hybrid-1 and Hybrid-2 structures, which is largely determined by the 3'-flanking sequence. Furthermore, both hybrid-type G-quadruplexes suggest a straightforward means for multimer formation with effective packing in the human telomeric sequence and provide important implications for drug targeting of G-quadruplexes in human telomeres.
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| ==About this Structure==
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| 2JPZ is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPZ OCA].
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| ==Reference==
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| Structure of the Hybrid-2 type intramolecular human telomeric G-quadruplex in K+ solution: insights into structure polymorphism of the human telomeric sequence., Dai J, Carver M, Punchihewa C, Jones RA, Yang D, Nucleic Acids Res. 2007;35(15):4927-40. Epub 2007 Jul 10. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17626043 17626043]
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| [[Category: Protein complex]] | |
| [[Category: Carver, M.]] | |
| [[Category: Dai, J.]] | |
| [[Category: Jones, R.]] | |
| [[Category: Punchihewa, C.]] | |
| [[Category: Yang, D.]] | |
| [[Category: dna]]
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| [[Category: human telomeric sequence]]
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| [[Category: nmr]]
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| [[Category: quadruplex]]
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| ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:00:48 2008''
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