2jrm: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
 
(12 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2jrm.jpg|left|200px]]


{{Structure
==Solution NMR structure of ribosome modulation factor VP1593 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR55==
|PDB= 2jrm |SIZE=350|CAPTION= <scene name='initialview01'>2jrm</scene>
<StructureSection load='2jrm' size='340' side='right'caption='[[2jrm]]' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND=  
<table><tr><td colspan='2'>[[2jrm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JRM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JRM FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
|GENE= VP1593 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 Vibrio parahaemolyticus])
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jrm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jrm OCA], [https://pdbe.org/2jrm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jrm RCSB], [https://www.ebi.ac.uk/pdbsum/2jrm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jrm ProSAT], [https://www.topsan.org/Proteins/NESGC/2jrm TOPSAN]</span></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3130 Rmf]</span>
</table>
|RELATEDENTRY=
== Function ==
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jrm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jrm OCA], [http://www.ebi.ac.uk/pdbsum/2jrm PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2jrm RCSB]</span>
[https://www.uniprot.org/uniprot/Q87PC4_VIBPA Q87PC4_VIBPA] During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes).[HAMAP-Rule:MF_00919]
}}
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
'''Solution NMR structure of ribosome modulation factor VP1593 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR55'''
Check<jmol>
 
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jr/2jrm_consurf.spt"</scriptWhenChecked>
==About this Structure==
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
2JRM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JRM OCA].  
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Single protein]]
  </jmolCheckbox>
[[Category: Vibrio parahaemolyticus]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jrm ConSurf].
[[Category: Acton, T B.]]
<div style="clear:both"></div>
[[Category: Baran, M C.]]
__TOC__
[[Category: Cunningham, K.]]
</StructureSection>
[[Category: Jiang, M.]]
[[Category: Large Structures]]
[[Category: Liu, J.]]
[[Category: Vibrio parahaemolyticus RIMD 2210633]]
[[Category: Ma, L.]]
[[Category: Acton TB]]
[[Category: Montelione, G T.]]
[[Category: Baran MC]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Cunningham K]]
[[Category: Owens, L.]]
[[Category: Jiang M]]
[[Category: Rossi, P.]]
[[Category: Liu J]]
[[Category: Rost, B.]]
[[Category: Ma L]]
[[Category: Swapna, G.]]
[[Category: Montelione GT]]
[[Category: Tang, Y.]]
[[Category: Owens L]]
[[Category: Wang, H.]]
[[Category: Rossi P]]
[[Category: Xiao, R.]]
[[Category: Rost B]]
[[Category: nesg]]
[[Category: Swapna G]]
[[Category: northeast structural genomics consortium]]
[[Category: Tang Y]]
[[Category: protein structure initiative]]
[[Category: Wang H]]
[[Category: psi-2]]
[[Category: Xiao R]]
[[Category: solution nmr structure]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:01:06 2008''
Retrieved from "https://proteopedia.org/2jrm"