6dr2: Difference between revisions

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{{Large structure}}
 
==Ca2+-bound human type 3 1,4,5-inositol trisphosphate receptor==
==Ca2+-bound human type 3 1,4,5-inositol trisphosphate receptor==
<StructureSection load='6dr2' size='340' side='right' caption='[[6dr2]], [[Resolution|resolution]] 4.33&Aring;' scene=''>
<SX load='6dr2' size='340' side='right' viewer='molstar' caption='[[6dr2]], [[Resolution|resolution]] 4.33&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6dr2]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DR2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DR2 FirstGlance]. <br>
<table><tr><td colspan='2'>[[6dr2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DR2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DR2 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.33&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dr2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dr2 OCA], [http://pdbe.org/6dr2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dr2 RCSB], [http://www.ebi.ac.uk/pdbsum/6dr2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dr2 ProSAT]</span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dr2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dr2 OCA], [https://pdbe.org/6dr2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dr2 RCSB], [https://www.ebi.ac.uk/pdbsum/6dr2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dr2 ProSAT]</span></td></tr>
</table>
</table>
{{Large structure}}
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/ITPR3_HUMAN ITPR3_HUMAN]] Receptor for inositol 1,4,5-trisphosphate, a second messenger that mediates the release of intracellular calcium.  
[https://www.uniprot.org/uniprot/ITPR3_HUMAN ITPR3_HUMAN] Receptor for inositol 1,4,5-trisphosphate, a second messenger that mediates the release of intracellular calcium.
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Inositol trisphosphate receptors (IP3Rs) are ubiquitous Ca(2+)-permeable channels that mediate release of Ca(2+) from the endoplasmic reticulum, thereby regulating numerous processes including cell division, cell death, differentiation and fertilization. IP3Rs are jointly activated by inositol trisphosphate (IP3) and their permeant ion, Ca(2+). At high concentrations, however, Ca(2+) inhibits activity, ensuring precise spatiotemporal control over intracellular Ca(2+). Despite extensive characterization of IP3R, the mechanisms through which these molecules control channel gating have remained elusive. Here, we present structures of full-length human type 3 IP3Rs in ligand-bound and ligand-free states. Multiple IP3-bound structures demonstrate that the large cytoplasmic domain provides a platform for propagation of long-range conformational changes to the ion-conduction gate. Structures in the presence of Ca(2+) reveal two Ca(2+)-binding sites that induce the disruption of numerous interactions between subunits, thereby inhibiting IP3R. These structures thus provide a mechanistic basis for beginning to understand the regulation of IP3R.
 
Structural basis for the regulation of inositol trisphosphate receptors by Ca(2+) and IP3.,Paknejad N, Hite RK Nat Struct Mol Biol. 2018 Jul 16. pii: 10.1038/s41594-018-0089-6. doi:, 10.1038/s41594-018-0089-6. PMID:30013099<ref>PMID:30013099</ref>
 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 6dr2" style="background-color:#fffaf0;"></div>
 
==See Also==
*[[Inositol 1%2C4%2C5-Trisphosphate Receptor|Inositol 1%2C4%2C5-Trisphosphate Receptor]]
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</SX>
[[Category: Hite, R K]]
[[Category: Homo sapiens]]
[[Category: Paknejad, N]]
[[Category: Large Structures]]
[[Category: Calcium channel]]
[[Category: Hite RK]]
[[Category: Ion channel]]
[[Category: Paknejad N]]
[[Category: Metal transport]]
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