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[[Image:2odo.jpg|left|200px]]


{{Structure
==Crystal structure of Pseudomonas Fluorescens alanine racemase==
|PDB= 2odo |SIZE=350|CAPTION= <scene name='initialview01'>2odo</scene>, resolution 2.80&Aring;
<StructureSection load='2odo' size='340' side='right'caption='[[2odo]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
|SITE= <scene name='pdbsite=AC1:Act+Binding+Site+For+Residue+B+400'>AC1</scene>, <scene name='pdbsite=AC2:Act+Binding+Site+For+Residue+A+1400'>AC2</scene>, <scene name='pdbsite=AC3:Act+Binding+Site+For+Residue+D+2400'>AC3</scene> and <scene name='pdbsite=AC4:Act+Binding+Site+For+Residue+C+3400'>AC4</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=LLP:2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)'>LLP</scene>
<table><tr><td colspan='2'>[[2odo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ODO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ODO FirstGlance]. <br>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Alanine_racemase Alanine racemase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.1 5.1.1.1] </span>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
|GENE=
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene></td></tr>
|DOMAIN=
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2odo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2odo OCA], [https://pdbe.org/2odo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2odo RCSB], [https://www.ebi.ac.uk/pdbsum/2odo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2odo ProSAT]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2odo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2odo OCA], [http://www.ebi.ac.uk/pdbsum/2odo PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2odo RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/Q4ADX2_PSEFL Q4ADX2_PSEFL] Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids (By similarity).[HAMAP-Rule:MF_01201]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/od/2odo_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2odo ConSurf].
<div style="clear:both"></div>


'''Crystal structure of Pseudomonas Fluorescens alanine racemase'''
==See Also==
 
*[[Alanine racemase 3D structures|Alanine racemase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
2ODO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ODO OCA].
[[Category: Large Structures]]
[[Category: Alanine racemase]]
[[Category: Pseudomonas fluorescens]]
[[Category: Pseudomonas fluorescens]]
[[Category: Single protein]]
[[Category: Ohnishi K]]
[[Category: Ohnishi, K.]]
[[Category: Tsuge H]]
[[Category: Tsuge, H.]]
[[Category: Yokoigawa K]]
[[Category: Yokoigawa, K.]]
[[Category: alanine racemase]]
[[Category: isomerase]]
[[Category: plp]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:16:19 2008''

Latest revision as of 08:57, 25 October 2023

Crystal structure of Pseudomonas Fluorescens alanine racemase

2odo, resolution 2.80Å

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