2om6: Difference between revisions

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[[Image:2om6.jpg|left|200px]]


{{Structure
==Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) from Pyrococcus Horikoshii OT3==
|PDB= 2om6 |SIZE=350|CAPTION= <scene name='initialview01'>2om6</scene>, resolution 2.20&Aring;
<StructureSection load='2om6' size='340' side='right'caption='[[2om6]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+A+1300'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+A+1301'>AC2</scene>, <scene name='pdbsite=AC3:So4+Binding+Site+For+Residue+B+1302'>AC3</scene>, <scene name='pdbsite=AC4:Mg+Binding+Site+For+Residue+B+1401'>AC4</scene>, <scene name='pdbsite=AC5:Cl+Binding+Site+For+Residue+B+1402'>AC5</scene> and <scene name='pdbsite=AC6:Cl+Binding+Site+For+Residue+B+1403'>AC6</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
<table><tr><td colspan='2'>[[2om6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OM6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OM6 FirstGlance]. <br>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoserine_phosphatase Phosphoserine phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.3 3.1.3.3] </span>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
|GENE=
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
|DOMAIN=
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2om6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2om6 OCA], [https://pdbe.org/2om6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2om6 RCSB], [https://www.ebi.ac.uk/pdbsum/2om6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2om6 ProSAT], [https://www.topsan.org/Proteins/RSGI/2om6 TOPSAN]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2om6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2om6 OCA], [http://www.ebi.ac.uk/pdbsum/2om6 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2om6 RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/O57991_PYRHO O57991_PYRHO]
 
== Evolutionary Conservation ==
'''Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) from Pyrococcus Horikoshii OT3'''
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
 
  <jmolCheckbox>
==About this Structure==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/om/2om6_consurf.spt"</scriptWhenChecked>
2OM6 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OM6 OCA].  
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Phosphoserine phosphatase]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Pyrococcus horikoshii]]
  </jmolCheckbox>
[[Category: Single protein]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2om6 ConSurf].
[[Category: Baba, S.]]
<div style="clear:both"></div>
[[Category: Ebihara, A.]]
__TOC__
[[Category: Gayathri, D.]]
</StructureSection>
[[Category: Jeyakanthan, J.]]
[[Category: Large Structures]]
[[Category: Kuramitsu, S.]]
[[Category: Pyrococcus horikoshii OT3]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Baba S]]
[[Category: Shinkai, A.]]
[[Category: Ebihara A]]
[[Category: Shiro, Y.]]
[[Category: Gayathri D]]
[[Category: Vaijayanthimala, S.]]
[[Category: Jeyakanthan J]]
[[Category: Velmurugan, D.]]
[[Category: Kuramitsu S]]
[[Category: Yokoyama, S.]]
[[Category: Shinkai A]]
[[Category: b-hairpin]]
[[Category: Shiro Y]]
[[Category: four-helix bundle]]
[[Category: Vaijayanthimala S]]
[[Category: hydrolase]]
[[Category: Velmurugan D]]
[[Category: national project on protein structural and functional analyse]]
[[Category: Yokoyama S]]
[[Category: nppsfa]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: rossmann fold]]
[[Category: rsgi]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:19:54 2008''

Latest revision as of 00:20, 28 December 2023

Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) from Pyrococcus Horikoshii OT3

2om6, resolution 2.20Å

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