6m7l: Difference between revisions

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'''Unreleased structure'''


The entry 6m7l is ON HOLD
==Complex of OxyA with the X-domain from GPA biosynthesis==
<StructureSection load='6m7l' size='340' side='right'caption='[[6m7l]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[6m7l]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Actinomadura_parvosata_subsp._kistnae Actinomadura parvosata subsp. kistnae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M7L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M7L FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.648297&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m7l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m7l OCA], [https://pdbe.org/6m7l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m7l RCSB], [https://www.ebi.ac.uk/pdbsum/6m7l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m7l ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Kistamicin is a divergent member of the glycopeptide antibiotics, a structurally complex class of important, clinically relevant antibiotics often used as the last resort against resistant bacteria. The extensively crosslinked structure of these antibiotics that is essential for their activity makes their chemical synthesis highly challenging and limits their production to bacterial fermentation. Kistamicin contains three crosslinks, including an unusual 15-membered A-O-B ring, despite the presence of only two Cytochrome P450 Oxy enzymes thought to catalyse formation of such crosslinks within the biosynthetic gene cluster. In this study, we characterise the kistamicin cyclisation pathway, showing that the two Oxy enzymes are responsible for these crosslinks within kistamicin and that they function through interactions with the X-domain, unique to glycopeptide antibiotic biosynthesis. We also show that the kistamicin OxyC enzyme is a promiscuous biocatalyst, able to install multiple crosslinks into peptides containing phenolic amino acids.


Authors: Greule, A., Izore, T., Tailhades, J., Peschke, M., Schoppet, M., Ahmed, I., Kulik, A., Adamek, M., Ziemert, N., De Voss, J., Stegmann, E., Cryle, J.M.
Kistamicin biosynthesis reveals the biosynthetic requirements for production of highly crosslinked glycopeptide antibiotics.,Greule A, Izore T, Iftime D, Tailhades J, Schoppet M, Zhao Y, Peschke M, Ahmed I, Kulik A, Adamek M, Goode RJA, Schittenhelm RB, Kaczmarski JA, Jackson CJ, Ziemert N, Krenske EH, De Voss JJ, Stegmann E, Cryle MJ Nat Commun. 2019 Jun 13;10(1):2613. doi: 10.1038/s41467-019-10384-w. PMID:31197182<ref>PMID:31197182</ref>


Description: Complex of OxyA with the X-domain from GPA biosynthesis
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
[[Category: Cryle, J.M]]
<div class="pdbe-citations 6m7l" style="background-color:#fffaf0;"></div>
[[Category: Ziemert, N]]
== References ==
[[Category: Peschke, M]]
<references/>
[[Category: Stegmann, E]]
__TOC__
[[Category: Adamek, M]]
</StructureSection>
[[Category: Schoppet, M]]
[[Category: Large Structures]]
[[Category: Izore, T]]
[[Category: Adamek M]]
[[Category: Kulik, A]]
[[Category: Ahmed I]]
[[Category: De Voss, J]]
[[Category: Cryle MJ]]
[[Category: Ahmed, I]]
[[Category: De Voss J]]
[[Category: Tailhades, J]]
[[Category: Greule A]]
[[Category: Greule, A]]
[[Category: Izore T]]
[[Category: Kulik A]]
[[Category: Peschke M]]
[[Category: Schoppet M]]
[[Category: Stegmann E]]
[[Category: Tailhades J]]
[[Category: Ziemert N]]

Latest revision as of 13:29, 13 August 2026

Complex of OxyA with the X-domain from GPA biosynthesis

6m7l, resolution 2.65Å

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