2q1v: Difference between revisions

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[[Image:2q1v.jpg|left|200px]]


{{Structure
==Ancestral corticoid receptor in complex with cortisol==
|PDB= 2q1v |SIZE=350|CAPTION= <scene name='initialview01'>2q1v</scene>, resolution 1.95&Aring;
<StructureSection load='2q1v' size='340' side='right'caption='[[2q1v]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PDN:17,21-DIHYDROXYPREGNA-1,4-DIENE-3,11,20-TRIONE'>PDN</scene>
<table><tr><td colspan='2'>[[2q1v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Unidentified Unidentified]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q1V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Q1V FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
|GENE=  
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PDN:17,21-DIHYDROXYPREGNA-1,4-DIENE-3,11,20-TRIONE'>PDN</scene></td></tr>
|DOMAIN=
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2q1v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q1v OCA], [https://pdbe.org/2q1v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2q1v RCSB], [https://www.ebi.ac.uk/pdbsum/2q1v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2q1v ProSAT]</span></td></tr>
|RELATEDENTRY=[[2q1h|2Q1H]]
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2q1v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q1v OCA], [http://www.ebi.ac.uk/pdbsum/2q1v PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2q1v RCSB]</span>
== Evolutionary Conservation ==
}}
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
'''Ancestral corticoid receptor in complex with cortisol'''
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q1/2q1v_consurf.spt"</scriptWhenChecked>
 
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
==Overview==
    <text>to colour the structure by Evolutionary Conservation</text>
The structural mechanisms by which proteins have evolved new functions are known only indirectly. We report x-ray crystal structures of a resurrected ancestral protein-the approximately 450 million-year-old precursor of vertebrate glucocorticoid (GR) and mineralocorticoid (MR) receptors. Using structural, phylogenetic, and functional analysis, we identify the specific set of historical mutations that recapitulate the evolution of GR's hormone specificity from an MR-like ancestor. These substitutions repositioned crucial residues to create new receptor-ligand and intraprotein contacts. Strong epistatic interactions occur because one substitution changes the conformational position of another site. "Permissive" mutations-substitutions of no immediate consequence, which stabilize specific elements of the protein and allow it to tolerate subsequent function-switching changes-played a major role in determining GR's evolutionary trajectory.
  </jmolCheckbox>
 
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2q1v ConSurf].
==About this Structure==
<div style="clear:both"></div>
2Q1V is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Unidentified Unidentified]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q1V OCA].  
__TOC__
 
</StructureSection>
==Reference==
[[Category: Large Structures]]
Crystal structure of an ancient protein: evolution by conformational epistasis., Ortlund EA, Bridgham JT, Redinbo MR, Thornton JW, Science. 2007 Sep 14;317(5844):1544-8. Epub 2007 Aug 16. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17702911 17702911]
[[Category: Protein complex]]
[[Category: Unidentified]]
[[Category: Unidentified]]
[[Category: Ortlund, E A.]]
[[Category: Ortlund EA]]
[[Category: Redinbo, M R.]]
[[Category: Redinbo MR]]
[[Category: common ancestor]]
[[Category: corticoid]]
[[Category: cortisol]]
[[Category: evolution]]
[[Category: mineralocorticoid]]
[[Category: nuclear receptor]]
[[Category: transcription]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:43:33 2008''

Latest revision as of 09:13, 21 February 2024

Ancestral corticoid receptor in complex with cortisol

2q1v, resolution 1.95Å

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