2qhv: Difference between revisions

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[[Image:2qhv.jpg|left|200px]]


{{Structure
==Structural Basis of Octanoic Acid Recognition by Lipoate-Protein Ligase B==
|PDB= 2qhv |SIZE=350|CAPTION= <scene name='initialview01'>2qhv</scene>, resolution 1.600&Aring;
<StructureSection load='2qhv' size='340' side='right'caption='[[2qhv]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
|SITE= <scene name='pdbsite=AC1:Oc9+Binding+Site+For+Residue+A+1001'>AC1</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=OC9:OCTAN-1-OL'>OC9</scene>
<table><tr><td colspan='2'>[[2qhv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QHV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QHV FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
|GENE= TTC 1746 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 Thermus thermophilus])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OC9:OCTAN-1-OL'>OC9</scene></td></tr>
|DOMAIN=
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qhv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qhv OCA], [https://pdbe.org/2qhv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qhv RCSB], [https://www.ebi.ac.uk/pdbsum/2qhv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qhv ProSAT]</span></td></tr>
|RELATEDENTRY=[[2qhs|2QHS]], [[2qht|2QHT]], [[2qhu|2QHU]]
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qhv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qhv OCA], [http://www.ebi.ac.uk/pdbsum/2qhv PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2qhv RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/LIPB_THET8 LIPB_THET8] Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate (By similarity).
 
== Evolutionary Conservation ==
'''Structural Basis of Octanoic Acid Recognition by Lipoate-Protein Ligase B'''
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
 
  <jmolCheckbox>
==About this Structure==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qh/2qhv_consurf.spt"</scriptWhenChecked>
2QHV is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QHV OCA].  
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==Reference==
  </jmolCheckbox>
Structural basis of octanoic acid recognition by lipoate-protein ligase B., Kim do J, Lee SJ, Kim HS, Kim KH, Lee HH, Yoon HJ, Suh SW, Proteins. 2008 Mar;70(4):1620-5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18076036 18076036]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qhv ConSurf].
[[Category: Single protein]]
<div style="clear:both"></div>
[[Category: Thermus thermophilus]]
__TOC__
[[Category: Kim, D J.]]
</StructureSection>
[[Category: Kim, H S.]]
[[Category: Large Structures]]
[[Category: Kim, K H.]]
[[Category: Thermus thermophilus HB8]]
[[Category: Lee, H H.]]
[[Category: Kim DJ]]
[[Category: Lee, S J.]]
[[Category: Kim HS]]
[[Category: Suh, S W.]]
[[Category: Kim KH]]
[[Category: Yoon, H J.]]
[[Category: Lee HH]]
[[Category: globular protein]]
[[Category: Lee SJ]]
[[Category: transferase]]
[[Category: Suh SW]]
 
[[Category: Yoon HJ]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:49:29 2008''

Latest revision as of 13:54, 13 March 2024

Structural Basis of Octanoic Acid Recognition by Lipoate-Protein Ligase B

2qhv, resolution 1.60Å

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