3aer: Difference between revisions

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==Structure of the light-independent protochlorophyllide reductase catalyzing a key reduction for greening in the dark==
==Structure of the light-independent protochlorophyllide reductase catalyzing a key reduction for greening in the dark==
<StructureSection load='3aer' size='340' side='right' caption='[[3aer]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
<StructureSection load='3aer' size='340' side='right'caption='[[3aer]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3aer]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhodonostoc_capsulatum"_molisch_1907 "rhodonostoc capsulatum" molisch 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AER OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AER FirstGlance]. <br>
<table><tr><td colspan='2'>[[3aer]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodobacter_capsulatus Rhodobacter capsulatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AER OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AER FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3aek|3aek]], [[3aeq|3aeq]], [[3aes|3aes]], [[3aet|3aet]], [[3aeu|3aeu]]</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3aer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aer OCA], [https://pdbe.org/3aer PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3aer RCSB], [https://www.ebi.ac.uk/pdbsum/3aer PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3aer ProSAT]</span></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bchN ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1061 "Rhodonostoc capsulatum" Molisch 1907]), bchB, bchK ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1061 "Rhodonostoc capsulatum" Molisch 1907])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3aer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aer OCA], [http://pdbe.org/3aer PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3aer RCSB], [http://www.ebi.ac.uk/pdbsum/3aer PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3aer ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/BCHN_RHOCB BCHN_RHOCB]] Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.[HAMAP-Rule:MF_00352]<ref>PMID:18358835</ref> [[http://www.uniprot.org/uniprot/BCHB_RHOCB BCHB_RHOCB]] Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.[HAMAP-Rule:MF_00353]<ref>PMID:18358835</ref> 
[https://www.uniprot.org/uniprot/BCHN_RHOCB BCHN_RHOCB] Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.[HAMAP-Rule:MF_00352]<ref>PMID:18358835</ref>  
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ae/3aer_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ae/3aer_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Rhodonostoc capsulatum molisch 1907]]
[[Category: Large Structures]]
[[Category: Fujita, Y]]
[[Category: Rhodobacter capsulatus]]
[[Category: Kurisu, G]]
[[Category: Fujita Y]]
[[Category: Muraki, N]]
[[Category: Kurisu G]]
[[Category: Nomata, J]]
[[Category: Muraki N]]
[[Category: Shiba, T]]
[[Category: Nomata J]]
[[Category: Bacteriochlorophyll biosynthesis]]
[[Category: Shiba T]]
[[Category: Chlorophyll biosynthesis]]
[[Category: Iron/sulfur cluster]]
[[Category: Oxidoreductase]]
[[Category: Photosynthesis]]
Retrieved from "https://proteopedia.org/3aer"