6mv6: Difference between revisions
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New page: '''Unreleased structure''' The entry 6mv6 is ON HOLD Authors: Couture, J.-F., Doucet, N. Description: Crystal structure of RNAse 6 Category: Unreleased Structures [[Category: Douce... |
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==Crystal structure of RNAse 6== | |||
<StructureSection load='6mv6' size='340' side='right'caption='[[6mv6]], [[Resolution|resolution]] 1.50Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[6mv6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MV6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6MV6 FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6mv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mv6 OCA], [https://pdbe.org/6mv6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6mv6 RCSB], [https://www.ebi.ac.uk/pdbsum/6mv6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6mv6 ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/RNAS6_HUMAN RNAS6_HUMAN] May have a role in host defense. | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Ribonuclease 6 (RNase 6) is one of eight catalytically active human pancreatic-type RNases that belong to a superfamily of rapidly evolving enzymes. Like some of its human homologues, RNase 6 exhibits host defense properties such as antiviral and antibacterial activities. Recently solved crystal structures of this enzyme in its nucleotide-free form show the conservation of the prototypical kidney-shaped fold preserved among vertebrate RNases, in addition to revealing the presence of a unique secondary active site. In this study, we determine the structural and conformational properties experienced by RNase 6 upon binding to substrate and product analogues. We present the first crystal structures of RNase 6 bound to a nucleotide ligand (adenosine 5'-monophosphate), in addition to RNase 6 bound to phosphate ions. While the enzyme preserves B2 subsite ligand preferences, our results show a lack of typical B2 subsite interactions normally observed in homologous ligand-bound RNases. A comparison of the dynamical properties of RNase 6 in its apo-, substrate-, and product-bound states highlight the unique dynamical properties experienced on time scales ranging from nano- to milliseconds. Overall, our results confirm the specific evolutionary adaptation of RNase 6 relative to its unique catalytic and biological activities. | |||
Insights into Structural and Dynamical Changes Experienced by Human RNase 6 upon Ligand Binding.,Narayanan C, Bernard DN, Letourneau M, Gagnon J, Gagne D, Bafna K, Calmettes C, Couture JF, Agarwal PK, Doucet N Biochemistry. 2020 Feb 18;59(6):755-765. doi: 10.1021/acs.biochem.9b00888. Epub, 2020 Jan 24. PMID:31909602<ref>PMID:31909602</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
[[Category: | <div class="pdbe-citations 6mv6" style="background-color:#fffaf0;"></div> | ||
[[Category: Couture | |||
==See Also== | |||
*[[Ribonuclease 3D structures|Ribonuclease 3D structures]] | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Homo sapiens]] | |||
[[Category: Large Structures]] | |||
[[Category: Couture J-F]] | |||
[[Category: Doucet N]] | |||
