3c8m: Difference between revisions

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[[Image:3c8m.jpg|left|200px]]


{{Structure
==Crystal structure of homoserine dehydrogenase from Thermoplasma volcanium==
|PDB= 3c8m |SIZE=350|CAPTION= <scene name='initialview01'>3c8m</scene>, resolution 1.900&Aring;
<StructureSection load='3c8m' size='340' side='right'caption='[[3c8m]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+A+401'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+A+402'>AC2</scene> and <scene name='pdbsite=AC3:So4+Binding+Site+For+Residue+A+403'>AC3</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
<table><tr><td colspan='2'>[[3c8m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoplasma_volcanium_GSS1 Thermoplasma volcanium GSS1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C8M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C8M FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
|GENE= TVG0375766, TV0389 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273116 Thermoplasma volcanium GSS1])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
|DOMAIN=
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c8m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c8m OCA], [https://pdbe.org/3c8m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c8m RCSB], [https://www.ebi.ac.uk/pdbsum/3c8m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c8m ProSAT], [https://www.topsan.org/Proteins/MCSG/3c8m TOPSAN]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3c8m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c8m OCA], [http://www.ebi.ac.uk/pdbsum/3c8m PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3c8m RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/Q97BR6_THEVO Q97BR6_THEVO]
 
== Evolutionary Conservation ==
'''Crystal structure of homoserine dehydrogenase from Thermoplasma volcanium'''
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
 
  <jmolCheckbox>
==About this Structure==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c8/3c8m_consurf.spt"</scriptWhenChecked>
3C8M is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermoplasma_volcanium_gss1 Thermoplasma volcanium gss1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C8M OCA].  
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Single protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Thermoplasma volcanium gss1]]
  </jmolCheckbox>
[[Category: Abdullah, J.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c8m ConSurf].
[[Category: Hendricks, R.]]
<div style="clear:both"></div>
[[Category: Joachimiak, A.]]
__TOC__
[[Category: MCSG, Midwest Center for Structural Genomics.]]
</StructureSection>
[[Category: Osipiuk, J.]]
[[Category: Large Structures]]
[[Category: apc89447]]
[[Category: Thermoplasma volcanium GSS1]]
[[Category: dehydrogenase]]
[[Category: Abdullah J]]
[[Category: homoserine]]
[[Category: Hendricks R]]
[[Category: mcsg]]
[[Category: Joachimiak A]]
[[Category: midwest center for structural genomic]]
[[Category: Osipiuk J]]
[[Category: oxidoreductase]]
[[Category: protein structure initiative]]
[[Category: psi-2]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:31:06 2008''

Latest revision as of 09:44, 6 November 2024

Crystal structure of homoserine dehydrogenase from Thermoplasma volcanium

3c8m, resolution 1.90Å

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