3cfy: Difference between revisions

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[[Image:3cfy.jpg|left|200px]]


{{Structure
==Crystal structure of signal receiver domain of putative Luxo repressor protein from Vibrio parahaemolyticus==
|PDB= 3cfy |SIZE=350|CAPTION= <scene name='initialview01'>3cfy</scene>, resolution 2.50&Aring;
<StructureSection load='3cfy' size='340' side='right'caption='[[3cfy]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND=  
<table><tr><td colspan='2'>[[3cfy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CFY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CFY FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
|GENE= VP1469 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 Vibrio parahaemolyticus RIMD 2210633])
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cfy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cfy OCA], [https://pdbe.org/3cfy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cfy RCSB], [https://www.ebi.ac.uk/pdbsum/3cfy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cfy ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3cfy TOPSAN]</span></td></tr>
|DOMAIN=
</table>
|RELATEDENTRY=
== Function ==
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cfy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cfy OCA], [http://www.ebi.ac.uk/pdbsum/3cfy PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3cfy RCSB]</span>
[https://www.uniprot.org/uniprot/Q87PN2_VIBPA Q87PN2_VIBPA]
}}
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
'''Crystal structure of signal receiver domain of putative Luxo repressor protein from Vibrio parahaemolyticus'''
Check<jmol>
 
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cf/3cfy_consurf.spt"</scriptWhenChecked>
==About this Structure==
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
3CFY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CFY OCA].  
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Single protein]]
  </jmolCheckbox>
[[Category: Vibrio parahaemolyticus rimd 2210633]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cfy ConSurf].
[[Category: Almo, S C.]]
<div style="clear:both"></div>
[[Category: Burley, S K.]]
__TOC__
[[Category: Fong, R.]]
</StructureSection>
[[Category: Freeman, J.]]
[[Category: Large Structures]]
[[Category: Groshong, C.]]
[[Category: Vibrio parahaemolyticus RIMD 2210633]]
[[Category: Iizuka, M.]]
[[Category: Almo SC]]
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
[[Category: Burley SK]]
[[Category: Patskovsky, Y.]]
[[Category: Fong R]]
[[Category: Ramagopal, U A.]]
[[Category: Freeman J]]
[[Category: Sauder, J M.]]
[[Category: Groshong C]]
[[Category: Smith, D.]]
[[Category: Iizuka M]]
[[Category: Wasserman, S R.]]
[[Category: Patskovsky Y]]
[[Category: aaa-atpase]]
[[Category: Ramagopal UA]]
[[Category: atp-binding]]
[[Category: Sauder JM]]
[[Category: dna-binding]]
[[Category: Smith D]]
[[Category: new york structural genomix research consortium]]
[[Category: Wasserman SR]]
[[Category: nucleotide-binding]]
[[Category: nysgxrc]]
[[Category: protein structure initiative]]
[[Category: psi-2]]
[[Category: signal receiver domain]]
[[Category: structural genomic]]
[[Category: transcription]]
[[Category: transcription regulation]]
[[Category: uncharacterized protein]]
[[Category: unknown function]]
 
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Retrieved from "https://proteopedia.org/3cfy"