6nq9: Difference between revisions
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The | ==Crystal structure of YetJ mutant from Bacillus Subtilis - D195E== | ||
<StructureSection load='6nq9' size='340' side='right'caption='[[6nq9]], [[Resolution|resolution]] 3.10Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[6nq9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NQ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NQ9 FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1Å</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6nq9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nq9 OCA], [https://pdbe.org/6nq9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6nq9 RCSB], [https://www.ebi.ac.uk/pdbsum/6nq9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6nq9 ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/YETJ_BACSU YETJ_BACSU] | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
The anti-apoptotic transmembrane Bax inhibitor motif (TMBIM) containing protein family regulates Ca(2+) homeostasis, cell death, and the progression of diseases including cancers. The recent crystal structures of the TMBIM homolog BsYetJ reveal a conserved Asp171-Asp195 dyad that is proposed in regulating a pH-dependent Ca(2+) translocation. Here we show that BsYetJ mediates Ca(2+) fluxes in permeabilized mammalian cells, and its interaction with Ca(2+) is sensitive to protons and other cations. We report crystal structures of BsYetJ in additional states, revealing the flexibility of the dyad in a closed state and a pore-opening mechanism. Functional studies show that the dyad is responsible for both Ca(2+) affinity and pH dependence. Computational simulations suggest that protonation of Asp171 weakens its interaction with Arg60, leading to an open state. Our integrated analysis provides insights into the regulation of the BsYetJ Ca(2+) channel that may inform understanding of human TMBIM proteins regarding their roles in cell death and diseases. | |||
Ion and pH Sensitivity of a TMBIM Ca(2+) Channel.,Guo G, Xu M, Chang Y, Luyten T, Seitaj B, Liu W, Zhu P, Bultynck G, Shi L, Quick M, Liu Q Structure. 2019 Mar 15. pii: S0969-2126(19)30081-4. doi:, 10.1016/j.str.2019.03.003. PMID:30930064<ref>PMID:30930064</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
[[Category: | <div class="pdbe-citations 6nq9" style="background-color:#fffaf0;"></div> | ||
[[Category: Chang | == References == | ||
[[Category: Guo | <references/> | ||
__TOC__ | |||
</StructureSection> | |||
[[Category: Bacillus subtilis subsp. subtilis str. 168]] | |||
[[Category: Large Structures]] | |||
[[Category: Chang Y]] | |||
[[Category: Guo G]] | |||
[[Category: Liu Q]] | |||
Latest revision as of 06:57, 11 October 2023
Crystal structure of YetJ mutant from Bacillus Subtilis - D195E
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