6nr5: Difference between revisions

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'''Unreleased structure'''


The entry 6nr5 is ON HOLD
==Human LSD1 in complex with Phenelzine sulfate==
<StructureSection load='6nr5' size='340' side='right'caption='[[6nr5]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[6nr5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NR5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NR5 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=KXM:[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl+(2R,3R,4R)-5-[(4aR)-7,8-dimethyl-2,4-dioxo-5-(2-phenylethyl)-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-2,3,4-trihydroxypentyl+dihydrogen+diphosphate+(non-preferred+name)'>KXM</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6nr5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nr5 OCA], [https://pdbe.org/6nr5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6nr5 RCSB], [https://www.ebi.ac.uk/pdbsum/6nr5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6nr5 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/KDM1A_HUMAN KDM1A_HUMAN] Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me. May play a role in the repression of neuronal genes. Alone, it is unable to demethylate H3K4me on nucleosomes and requires the presence of RCOR1/CoREST to achieve such activity. Also acts as a coactivator of androgen receptor (ANDR)-dependent transcription, by being recruited to ANDR target genes and mediating demethylation of H3K9me, a specific tag for epigenetic transcriptional repression. The presence of PRKCB in ANDR-containing complexes, which mediates phosphorylation of 'Thr-6' of histone H3 (H3T6ph), a specific tag that prevents demethylation H3K4me, prevents H3K4me demethylase activity of KDM1A. Demethylates di-methylated 'Lys-370' of p53/TP53 which prevents interaction of p53/TP53 with TP53BP1 and represses p53/TP53-mediated transcriptional activation. Demethylates and stabilizes the DNA methylase DNMT1. Required for gastrulation during embryogenesis. Component of a RCOR/GFI/KDM1A/HDAC complex that suppresses, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development.<ref>PMID:12032298</ref> <ref>PMID:15620353</ref> <ref>PMID:16079795</ref> <ref>PMID:17805299</ref> <ref>PMID:20228790</ref>


Authors: Tan, A.H.Y., Tu, W., McCuaig, R., Donovan, T., Tsimbalyuk, S., Forwood, J.K., Rao, S.
==See Also==
 
*[[Lysine-specific histone demethylase 3D structures|Lysine-specific histone demethylase 3D structures]]
Description: Human LSD1 in complex with Phenelzine sulfate
== References ==
[[Category: Unreleased Structures]]
<references/>
[[Category: Rao, S]]
__TOC__
[[Category: Forwood, J.K]]
</StructureSection>
[[Category: Tsimbalyuk, S]]
[[Category: Homo sapiens]]
[[Category: Donovan, T]]
[[Category: Large Structures]]
[[Category: Tu, W]]
[[Category: Donovan T]]
[[Category: Mccuaig, R]]
[[Category: Forwood JK]]
[[Category: Tan, A.H.Y]]
[[Category: McCuaig R]]
[[Category: Rao S]]
[[Category: Tan AHY]]
[[Category: Tsimbalyuk S]]
[[Category: Tu W]]
Retrieved from "https://proteopedia.org/6nr5"