2r0q: Difference between revisions

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New page: left|200px {{Structure |PDB= 2r0q |SIZE=350|CAPTION= <scene name='initialview01'>2r0q</scene>, resolution 3.200Å |SITE= <scene name='pdbsite=AC1:So4+Binding+Site...
 
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[[Image:2r0q.jpg|left|200px]]


{{Structure
==Crystal structure of a serine recombinase- DNA regulatory complex==
|PDB= 2r0q |SIZE=350|CAPTION= <scene name='initialview01'>2r0q</scene>, resolution 3.200&Aring;
<StructureSection load='2r0q' size='340' side='right'caption='[[2r0q]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+D+210'>AC1</scene> and <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+F+210'>AC2</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=DA:2&#39;-DEOXYADENOSINE-5&#39;-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DC:2&#39;-DEOXYCYTIDINE-5&#39;-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2&#39;-DEOXYGUANOSINE-5&#39;-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5&#39;-MONOPHOSPHATE'>DT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
<table><tr><td colspan='2'>[[2r0q]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R0Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R0Q FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
|GENE= bin3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 Staphylococcus aureus])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02796 HTH_7], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03768 SR_ResInv]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r0q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r0q OCA], [https://pdbe.org/2r0q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r0q RCSB], [https://www.ebi.ac.uk/pdbsum/2r0q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r0q ProSAT]</span></td></tr>
|RELATEDENTRY=[[1gdt|1gdt]], [[2rsl|2rsl]], [[1zr4|1zr4]], [[2gm5|2gm5]], [[2gm4|2gm4]]
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2r0q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r0q OCA], [http://www.ebi.ac.uk/pdbsum/2r0q PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2r0q RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/BIN3_STAAU BIN3_STAAU] Potential DNA invertase.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r0/2r0q_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r0q ConSurf].
<div style="clear:both"></div>


'''Crystal structure of a serine recombinase- DNA regulatory complex'''
==See Also==
 
*[[Resolvase 3D structures|Resolvase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
2R0Q is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R0Q OCA].
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Staphylococcus aureus]]
[[Category: Staphylococcus aureus]]
[[Category: Mouw, K W.]]
[[Category: Mouw KW]]
[[Category: Rice, P A.]]
[[Category: Rice PA]]
[[Category: dna integration]]
[[Category: dna invertase]]
[[Category: dna recombination]]
[[Category: dna-binding protein]]
[[Category: plasmid]]
[[Category: protein-dna complex]]
[[Category: recombination/dna complex]]
[[Category: resolvase]]
[[Category: site-specific recombinase]]
[[Category: transposable element]]
[[Category: transposition]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr  2 11:58:26 2008''

Latest revision as of 09:19, 21 February 2024

Crystal structure of a serine recombinase- DNA regulatory complex

2r0q, resolution 3.20Å

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