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New page: left|200px {{Structure |PDB= 2yqu |SIZE=350|CAPTION= <scene name='initialview01'>2yqu</scene>, resolution 1.70Å |SITE= <scene name='pdbsite=AC1:Co3+Binding+Site+...
 
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{{Structure
==Crystal structures and evolutionary relationship of two different lipoamide dehydrogenase(E3s) from Thermus thermophilus==
|PDB= 2yqu |SIZE=350|CAPTION= <scene name='initialview01'>2yqu</scene>, resolution 1.70&Aring;
<StructureSection load='2yqu' size='340' side='right'caption='[[2yqu]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
|SITE= <scene name='pdbsite=AC1:Co3+Binding+Site+For+Residue+B+1501'>AC1</scene>, <scene name='pdbsite=AC2:Co3+Binding+Site+For+Residue+A+1502'>AC2</scene>, <scene name='pdbsite=AC3:Co3+Binding+Site+For+Residue+B+1503'>AC3</scene>, <scene name='pdbsite=AC4:Po4+Binding+Site+For+Residue+B+1701'>AC4</scene>, <scene name='pdbsite=AC5:Fad+Binding+Site+For+Residue+A+1601'>AC5</scene> and <scene name='pdbsite=AC6:Fad+Binding+Site+For+Residue+B+1602'>AC6</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>
<table><tr><td colspan='2'>[[2yqu]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YQU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YQU FirstGlance]. <br>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Dihydrolipoyl_dehydrogenase Dihydrolipoyl dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.4 1.8.1.4] </span>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
|GENE=
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02852 Pyr_redox_dim], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00070 Pyr_redox], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK06327 PRK06327], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK07208 PRK07208]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yqu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yqu OCA], [https://pdbe.org/2yqu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yqu RCSB], [https://www.ebi.ac.uk/pdbsum/2yqu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yqu ProSAT], [https://www.topsan.org/Proteins/RSGI/2yqu TOPSAN]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yqu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yqu OCA], [http://www.ebi.ac.uk/pdbsum/2yqu PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2yqu RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/Q5SLK6_THET8 Q5SLK6_THET8]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yq/2yqu_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yqu ConSurf].
<div style="clear:both"></div>


'''Crystal structures and evolutionary relationship of two different lipoamide dehydrogenase(E3s) from Thermus thermophilus'''
==See Also==
 
*[[Dihydrolipoamide dehydrogenase|Dihydrolipoamide dehydrogenase]]
 
__TOC__
==About this Structure==
</StructureSection>
2YQU is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YQU OCA].
[[Category: Large Structures]]
[[Category: Dihydrolipoyl dehydrogenase]]
[[Category: Thermus thermophilus HB8]]
[[Category: Single protein]]
[[Category: Adachi W]]
[[Category: Thermus thermophilus]]
[[Category: Hossain MT]]
[[Category: Adachi, W.]]
[[Category: Kamiya N]]
[[Category: Hossain, M T.]]
[[Category: Kondo H]]
[[Category: Kamiya, N.]]
[[Category: Kuramitsu K]]
[[Category: Kondo, H.]]
[[Category: Nakai T]]
[[Category: Kuramitsu, K.]]
[[Category: Nakai, T.]]
[[Category: 2-oxoglutarate dehydrogenase complex]]
[[Category: lipoamide dehydrogenase]]
[[Category: oxidoreductase]]
[[Category: pyruvate dehydrogenase complex]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr  2 11:58:50 2008''

Latest revision as of 08:07, 23 October 2024

Crystal structures and evolutionary relationship of two different lipoamide dehydrogenase(E3s) from Thermus thermophilus

2yqu, resolution 1.70Å

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