5qoo: Difference between revisions

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New page: '''Unreleased structure''' The entry 5qoo is ON HOLD Authors: Nelson, E.R., Velupillai, S., Talon, R., Collins, P.M., Krojer, T., Wang, D., Brandao-Neto, J., Douangamath, A., Burgess-Br...
 
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'''Unreleased structure'''


The entry 5qoo is ON HOLD
==PanDDA analysis group deposition -- Crystal Structure of DCP2 (NUDT20) in complex with FMOPL000144a==
 
<StructureSection load='5qoo' size='340' side='right'caption='[[5qoo]], [[Resolution|resolution]] 1.56&Aring;' scene=''>
Authors: Nelson, E.R., Velupillai, S., Talon, R., Collins, P.M., Krojer, T., Wang, D., Brandao-Neto, J., Douangamath, A., Burgess-Brown, N., Arrowsmith, C.H., Bountra, C., Huber, K., Delft, F.V.
== Structural highlights ==
 
<table><tr><td colspan='2'>[[5qoo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5QOO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5QOO FirstGlance]. <br>
Description: PanDDA analysis group deposition --Crystal Structure of DCP2 (NUDT20) in complex with FMOPL000144a
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.56&#8491;</td></tr>
[[Category: Unreleased Structures]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=LDJ:(~{N}~{Z})-2-methyl-~{N}-[5-[(2~{S})-oxolan-2-yl]-3~{H}-1,3,4-thiadiazol-2-ylidene]propanamide'>LDJ</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
[[Category: Huber, K]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5qoo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5qoo OCA], [https://pdbe.org/5qoo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5qoo RCSB], [https://www.ebi.ac.uk/pdbsum/5qoo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5qoo ProSAT]</span></td></tr>
[[Category: Nelson, E.R]]
</table>
[[Category: Arrowsmith, C.H]]
== Function ==
[[Category: Burgess-Brown, N]]
[https://www.uniprot.org/uniprot/DCP2_HUMAN DCP2_HUMAN] Decapping metalloenzyme that catalyzes the cleavage of the cap structure on mRNAs (PubMed:12417715, PubMed:12218187, PubMed:12923261, PubMed:21070968). Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP (PubMed:12486012, PubMed:12923261, PubMed:21070968). Necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay (PubMed:14527413). Plays a role in replication-dependent histone mRNA degradation (PubMed:18172165). Has higher activity towards mRNAs that lack a poly(A) tail (PubMed:21070968). Has no activity towards a cap structure lacking an RNA moiety (PubMed:21070968). Blocks autophagy in nutrient-rich conditions by repressing the expression of ATG-related genes through degration of their transcripts (PubMed:26098573).<ref>PMID:12218187</ref> <ref>PMID:12417715</ref> <ref>PMID:12486012</ref> <ref>PMID:12923261</ref> <ref>PMID:14527413</ref> <ref>PMID:18172165</ref> <ref>PMID:21070968</ref> <ref>PMID:26098573</ref>
[[Category: Brandao-Neto, J]]
== References ==
[[Category: Talon, R]]
<references/>
[[Category: Delft, F.V]]
__TOC__
[[Category: Collins, P.M]]
</StructureSection>
[[Category: Douangamath, A]]
[[Category: Homo sapiens]]
[[Category: Krojer, T]]
[[Category: Large Structures]]
[[Category: Velupillai, S]]
[[Category: Arrowsmith CH]]
[[Category: Wang, D]]
[[Category: Bountra C]]
[[Category: Bountra, C]]
[[Category: Brandao-Neto J]]
[[Category: Burgess-Brown N]]
[[Category: Collins PM]]
[[Category: Douangamath A]]
[[Category: Huber K]]
[[Category: Krojer T]]
[[Category: Nelson ER]]
[[Category: Talon R]]
[[Category: Velupillai S]]
[[Category: Wang D]]
[[Category: Von Delft F]]
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