6qq6: Difference between revisions

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New page: '''Unreleased structure''' The entry 6qq6 is ON HOLD Authors: Gopalasingam, C.C., Johnson, R.M., Chiduza, G.N., Tosha, T., Yamamoto, M., Shiro, Y., Antonyuk, S.V., Muench, S.P., Hasnain...
 
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'''Unreleased structure'''


The entry 6qq6 is ON HOLD
==Cryo-EM structure of dimeric quinol dependent nitric oxide reductase (qNOR) Val495Ala mutant from Alcaligenes xylosoxidans==
<SX load='6qq6' size='340' side='right' viewer='molstar' caption='[[6qq6]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[6qq6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QQ6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6QQ6 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.3&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=LOP:(1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL+(9Z)-OCTADEC-9-ENOATE'>LOP</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6qq6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qq6 OCA], [https://pdbe.org/6qq6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6qq6 RCSB], [https://www.ebi.ac.uk/pdbsum/6qq6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6qq6 ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Quinol-dependent nitric oxide reductases (qNORs) are membrane-integrated, iron-containing enzymes of the denitrification pathway, which catalyze the reduction of nitric oxide (NO) to the major ozone destroying gas nitrous oxide (N2O). Cryo-electron microscopy structures of active qNOR from Alcaligenes xylosoxidans and an activity-enhancing mutant have been determined to be at local resolutions of 3.7 and 3.2 A, respectively. They unexpectedly reveal a dimeric conformation (also confirmed for qNOR from Neisseria meningitidis) and define the active-site configuration, with a clear water channel from the cytoplasm. Structure-based mutagenesis has identified key residues involved in proton transport and substrate delivery to the active site of qNORs. The proton supply direction differs from cytochrome c-dependent NOR (cNOR), where water molecules from the cytoplasm serve as a proton source similar to those from cytochrome c oxidase.


Authors: Gopalasingam, C.C., Johnson, R.M., Chiduza, G.N., Tosha, T., Yamamoto, M., Shiro, Y., Antonyuk, S.V., Muench, S.P., Hasnain, S.S.
Dimeric structures of quinol-dependent nitric oxide reductases (qNORs) revealed by cryo-electron microscopy.,Gopalasingam CC, Johnson RM, Chiduza GN, Tosha T, Yamamoto M, Shiro Y, Antonyuk SV, Muench SP, Hasnain SS Sci Adv. 2019 Aug 28;5(8):eaax1803. doi: 10.1126/sciadv.aax1803. eCollection 2019, Aug. PMID:31489376<ref>PMID:31489376</ref>


Description: Cryo-EM structure of dimeric quinol dependent nitric oxide reductase (qNOR) Val495Ala mutant from Alcaligenes xylosoxidans
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
[[Category: Shiro, Y]]
<div class="pdbe-citations 6qq6" style="background-color:#fffaf0;"></div>
[[Category: Gopalasingam, C.C]]
== References ==
[[Category: Yamamoto, M]]
<references/>
[[Category: Hasnain, S.S]]
__TOC__
[[Category: Tosha, T]]
</SX>
[[Category: Muench, S.P]]
[[Category: Achromobacter xylosoxidans]]
[[Category: Antonyuk, S.V]]
[[Category: Large Structures]]
[[Category: Johnson, R.M]]
[[Category: Antonyuk SV]]
[[Category: Chiduza, G.N]]
[[Category: Chiduza GN]]
[[Category: Gopalasingam CC]]
[[Category: Hasnain SS]]
[[Category: Johnson RM]]
[[Category: Muench SP]]
[[Category: Shiro Y]]
[[Category: Tosha T]]
[[Category: Yamamoto M]]

Latest revision as of 18:29, 8 September 2026

Cryo-EM structure of dimeric quinol dependent nitric oxide reductase (qNOR) Val495Ala mutant from Alcaligenes xylosoxidans

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