1uly: Difference between revisions

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[[Image:1uly.jpg|left|200px]]


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==Crystal structure analysis of the ArsR homologue DNA-binding protein from P. horikoshii OT3==
The line below this paragraph, containing "STRUCTURE_1uly", creates the "Structure Box" on the page.
<StructureSection load='1uly' size='340' side='right'caption='[[1uly]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1uly]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ULY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ULY FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_1uly|  PDB=1uly  |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uly FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uly OCA], [https://pdbe.org/1uly PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uly RCSB], [https://www.ebi.ac.uk/pdbsum/1uly PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uly ProSAT]</span></td></tr>
 
</table>
'''Crystal structure analysis of the ArsR homologue DNA-binding protein from P. horikoshii OT3'''
== Function ==
 
[https://www.uniprot.org/uniprot/O59595_PYRHO O59595_PYRHO]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
1ULY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ULY OCA].  
Check<jmol>
 
  <jmolCheckbox>
==Reference==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ul/1uly_consurf.spt"</scriptWhenChecked>
Crystal structure of the PH1932 protein, a unique archaeal ArsR type winged-HTH transcription factor from Pyrococcus horikoshii OT3., Itou H, Yao M, Watanabe N, Tanaka I, Proteins. 2008 Mar;70(4):1631-4. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18076033 18076033]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Pyrococcus horikoshii]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Single protein]]
  </jmolCheckbox>
[[Category: Itou, H.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1uly ConSurf].
[[Category: Tanaka, I.]]
<div style="clear:both"></div>
[[Category: Watanabe, N.]]
__TOC__
[[Category: Yao, M.]]
</StructureSection>
[[Category: Dna binding protein]]
[[Category: Large Structures]]
[[Category: Helix-turn-helix]]
[[Category: Pyrococcus horikoshii OT3]]
[[Category: Structural genomic]]
[[Category: Itou H]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr  9 14:39:05 2008''
[[Category: Tanaka I]]
[[Category: Watanabe N]]
[[Category: Yao M]]
Retrieved from "https://proteopedia.org/1uly"