6jvw: Difference between revisions

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New page: '''Unreleased structure''' The entry 6jvw is ON HOLD Authors: Hong, H., Kim, K.-J. Description: Crystal structure of maleylpyruvate hydrolase from Sphingobium sp. SYK-6 in complex with...
 
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'''Unreleased structure'''


The entry 6jvw is ON HOLD
==Crystal structure of maleylpyruvate hydrolase from Sphingobium sp. SYK-6 in complex with manganese (II) ion and pyruvate==
<StructureSection load='6jvw' size='340' side='right'caption='[[6jvw]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[6jvw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sphingobium_sp._SYK-6 Sphingobium sp. SYK-6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JVW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JVW FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jvw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jvw OCA], [https://pdbe.org/6jvw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jvw RCSB], [https://www.ebi.ac.uk/pdbsum/6jvw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jvw ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/G2IPX5_SPHSK G2IPX5_SPHSK]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Sphingobium sp. strain SYK-6, an aerobic gram-negative bacillus found in soil, is known for utilizing lignin-derived monoaryls and biaryls as carbon sources and degrading aromatic compounds. The Sphingobium sp. strain SYK-6 genome contains three genes involved in salicylate catabolism: SLG_11260, SLG_11270, and SLG_11280. Here, we report that the gene product of SLG_11280 functions as a maleylpyruvate hydrolase (SsMPH) with Km and Kcat values of 166.2muM and 3.76 min(-1), respectively. This study also reveals the crystal structures of both the apo and pyruvate-manganese ion-bound SsMPH, which revealed that like other fumarylacetoacetate hydrolases, SsMPH dimerizes and has nine unique 310-helices. Molecular docking studies of maleylpyruvate also revealed the likely binding mode of SsMPH and its substrate.


Authors: Hong, H., Kim, K.-J.
Structural insights into a maleylpyruvate hydrolase from sphingobium sp. SYK-6, a bacterium degrading lignin-derived aryls.,Hong H, Seo H, Kim KJ Biochem Biophys Res Commun. 2019 May 9. pii: S0006-291X(19)30898-8. doi:, 10.1016/j.bbrc.2019.05.030. PMID:31079929<ref>PMID:31079929</ref>


Description: Crystal structure of maleylpyruvate hydrolase from Sphingobium sp. SYK-6 in complex with manganese (II) ion and pyruvate
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
[[Category: Kim, K.-J]]
<div class="pdbe-citations 6jvw" style="background-color:#fffaf0;"></div>
[[Category: Hong, H]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Sphingobium sp. SYK-6]]
[[Category: Hong H]]
[[Category: Kim K-J]]
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