6cdx: Difference between revisions

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New page: '''Unreleased structure''' The entry 6cdx is ON HOLD until Paper Publication Authors: Chakraborti, S., Nix, J., Bongura, C., Kimura, R., Filipp, F., Gambhir, S.S. Description: High-res...
 
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'''Unreleased structure'''


The entry 6cdx is ON HOLD  until Paper Publication
==High-resolution crystal structure of fluoropropylated cystine knot, binding to alpha-5 beta-6 integrin==
<StructureSection load='6cdx' size='340' side='right'caption='[[6cdx]], [[Resolution|resolution]] 1.00&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[6cdx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Momordica_cochinchinensis Momordica cochinchinensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CDX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6CDX FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4LT:(2R)-2-FLUOROPROPANOIC+ACID'>4LT</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6cdx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cdx OCA], [https://pdbe.org/6cdx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6cdx RCSB], [https://www.ebi.ac.uk/pdbsum/6cdx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6cdx ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/ITR1_MOMCO ITR1_MOMCO] Inhibits trypsin; probably participates in a plant defense mechanism.<ref>PMID:10801322</ref>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Advances in precision molecular imaging promise to transform our ability to detect, diagnose and treat disease. Here, we describe the engineering and validation of a new cystine knot peptide (knottin) that selectively recognizes human integrin alphavbeta6 with single-digit nanomolar affinity. We solve its 3D structure by NMR and x-ray crystallography and validate leads with 3 different radiolabels in pre-clinical models of cancer. We evaluate the lead tracer's safety, biodistribution and pharmacokinetics in healthy human volunteers, and show its ability to detect multiple cancers (pancreatic, cervical and lung) in patients at two study locations. Additionally, we demonstrate that the knottin PET tracers can also detect fibrotic lung disease in idiopathic pulmonary fibrosis patients. Our results indicate that these cystine knot PET tracers may have potential utility in multiple disease states that are associated with upregulation of integrin alphavbeta6.


Authors: Chakraborti, S., Nix, J., Bongura, C., Kimura, R., Filipp, F., Gambhir, S.S.
Evaluation of integrin alphavbeta6 cystine knot PET tracers to detect cancer and idiopathic pulmonary fibrosis.,Kimura RH, Wang L, Shen B, Huo L, Tummers W, Filipp FV, Guo HH, Haywood T, Abou-Elkacem L, Baratto L, Habte F, Devulapally R, Witney TH, Cheng Y, Tikole S, Chakraborti S, Nix J, Bonagura CA, Hatami N, Mooney JJ, Desai T, Turner S, Gaster RS, Otte A, Visser BC, Poultsides GA, Norton J, Park W, Stolowitz M, Lau K, Yang E, Natarajan A, Ilovich O, Srinivas S, Srinivasan A, Paulmurugan R, Willmann J, Chin FT, Cheng Z, Iagaru A, Li F, Gambhir SS Nat Commun. 2019 Oct 14;10(1):4673. doi: 10.1038/s41467-019-11863-w. PMID:31611594<ref>PMID:31611594</ref>


Description: High-resolution crystal structure of fluoropropylated cystine knot, binding to alpha-5 beta-6 integrin
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
[[Category: Bongura, C]]
<div class="pdbe-citations 6cdx" style="background-color:#fffaf0;"></div>
[[Category: Chakraborti, S]]
== References ==
[[Category: Gambhir, S.S]]
<references/>
[[Category: Kimura, R]]
__TOC__
[[Category: Filipp, F]]
</StructureSection>
[[Category: Nix, J]]
[[Category: Large Structures]]
[[Category: Momordica cochinchinensis]]
[[Category: Bongura C]]
[[Category: Chakraborti S]]
[[Category: Filipp FV]]
[[Category: Gambhir S]]
[[Category: Kimura R]]
[[Category: Nix J]]

Latest revision as of 15:01, 4 October 2023

High-resolution crystal structure of fluoropropylated cystine knot, binding to alpha-5 beta-6 integrin

6cdx, resolution 1.00Å

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