Nucleoporin 3D structures: Difference between revisions

From Proteopedia
Jump to navigationJump to search
Michal Harel (talk | contribs)
32,831 edits
New page: == 3D Structures of Nucleoporin == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *NUP2 **3n7c – NUP2 RANBD ...
 
Michal Harel (talk | contribs)
32,831 edits
No edit summary
 
(7 intermediate revisions by the same user not shown)
Line 5: Line 5:


*NUP2
*NUP2
**[[3n7c]] – NUP2 RANBD – ''Ashbya gossypii''<br />
**[[3n7c]] – NUP2 RANBD – ''Ashbya gossypii''<br />
**[[2c1t]] – yNUP2 NTD +importrin alpha subunit - yeast<br />
**[[2c1t]] – yNUP2 NTD +importrin alpha subunit - yeast<br />
*NUP35
*NUP35
**[[8ozb]] – hNUP35 + nanobody - human<br />
**[[1wwh]] – mNUP35 MPPN domain - mouse<br />
**[[1wwh]] – mNUP35 MPPN domain - mouse<br />
*NUP37
*NUP37
**[[4fhl]] – fyNUP37 – fission yeast<br />
**[[4fhl]] – fyNUP37 – fission yeast<br />
**[[4fhm]], [[4fhn]], [[4gq2]] - fyNUP37 + NUP120<br />
**[[4fhm]], [[4fhn]], [[4gq2]] - fyNUP37 + NUP120<br />
*NUP43
*NUP43
**[[4i79]] – hNUP43 + polypeptide - human<br />
 
**[[4i79]] – hNUP43 + polypeptide <br />
 
*NUP50
*NUP50
**[[2ec1]] – hNUP50 RANBD <br />
 
**[[2ec1]] – hNUP50 RANBD 337-468 <br />
**[[7mo0]] - hNUP50 RANBD + RAN<br />
**[[3tj3]] - hNUP50 NTD+importin<br />
**[[3tj3]] - hNUP50 NTD+importin<br />
**[[2c1m]] – mNUP50 NTD +importin <br />
**[[2c1m]] – mNUP50 NTD +importin <br />
*NUP53
*NUP53
**[[3p3d]] - NUP53 RRM domain - ''Pischia guillermondii''<br />
**[[3p3d]] - NUP53 RRM domain - ''Pischia guillermondii''<br />
**[[4lir]] – hNUP53 residues 151-266<br />
**[[4lir]] – hNUP53 residues 151-266<br />
**[[5uaz]] – yNUP53 <br />
**[[5uaz]] – yNUP53 <br />
**[[5hb8]], [[5hb7]] – CtNUP53 - ''Chaetomium thermophilum''<br />
**[[5hb7]], [[5hb8]] – CtNUP53 - ''Chaetomium thermophilum''<br />
**[[5hb3]] – CtNUP53 + NUP NIC96 <br />
**[[5hb3]] – CtNUP53 + NUP NIC96 <br />
*NUP54
*NUP54
**[[4jo7]], [[4jo9]] – hNUP54 + hNUP58/45 <br />
**[[4jo7]], [[4jo9]] – hNUP54 + hNUP58/45 <br />
**[[3t97]] – rNUP54 + NUP62 - rat<br />
**[[3t97]] – rNUP54 + NUP62 - rat<br />
Line 31: Line 46:
**[[5c3l]] – fNUP54 coiled coil + NUP58 coiled coil + NUP62 coiled coil + nanobody - frog<br />
**[[5c3l]] – fNUP54 coiled coil + NUP58 coiled coil + NUP62 coiled coil + nanobody - frog<br />
**[[5c2u]] – fNUP54 ferredoxin-like domain + nanobody <br />
**[[5c2u]] – fNUP54 ferredoxin-like domain + nanobody <br />
*NUP57
*NUP57
**[[5cwt]] – CtNUP57 residues 265-317<br />
**[[5cwt]] – CtNUP57 residues 265-317<br />
**[[5cws]] – CtNUP57 residues 74-319 + NUP49 + NIC96 + antibody<br />
**[[5cws]] – CtNUP57 residues 74-319 + NUP49 + NIC96 + antibody<br />
*NUP58
*NUP58
**[[4jq5]] – hNUP58/45 <br />
**[[4jq5]] – hNUP58/45 <br />
**[[2osz]] – rNUP58/45 <br />
**[[2osz]] – rNUP58/45 <br />
*NUP62
*NUP62
**[[5h1x]] – rNUP62 coiled-coil domain<br />
**[[5h1x]] – rNUP62 coiled-coil domain<br />
*NUP82
*NUP82
**[[3pbp]] – yNUP82 NTD + NUP116 CTD + NUP159 CTD<br />
**[[3pbp]] – yNUP82 NTD + NUP116 CTD + NUP159 CTD<br />
**[[3tkn]] - yNUP82 NTD + NUP98 + NUP159 CTD<br />
**[[3tkn]] - yNUP82 NTD + NUP98 + NUP159 CTD<br />
**[[5cww]] – CtNUP82 + CtNUP145 CTD peptide + Ct159 CTD peptide<br />
**[[5cww]] – CtNUP82 + CtNUP145 CTD peptide + Ct159 CTD peptide<br />
*NUP84
*NUP84
**[[3jro]], [[3iko]] – yNUP84+NUP145+protein Sec13<br />
**[[3jro]], [[3iko]] – yNUP84+NUP145+protein Sec13<br />
**[[4xmm]] - yNUP84+NUP85+NUP120+NUP145+protein Seh1 + antibody<br />
**[[4xmm]] - yNUP84+NUP85+NUP120+NUP145+protein Seh1 + antibody<br />
**[[8tie]] - yNUP84+NUP85+NUP120+NUP133+NUP145+NUP Seh1 + SEC13 – Cryo EM<br />
**[[4xmn]] - yNUP84+NUP85+NUP120+NUP145 + antibody<br />
**[[4xmn]] - yNUP84+NUP85+NUP120+NUP145 + antibody<br />
**[[6x02]], [[6x03]] – yNUP84 + NUP133 + nanobody<br />
*NUP85
*NUP85
**[[3f3f]], [[3f3g]], [[3f3p]], [[3ewe]] – yNUP85+Seh1<br />
 
**[[3ewe]], [[3f3f]], [[3f3g]], [[3f3p]] – yNUP85+Seh1<br />
**[[6x08]] - yNUP85+Seh1 + nanobody<br />
 
*NUP88
 
**[[7mni]] – hNUP88 NTD 1-493 + NUP98 715-863<br />
 
*NUP93
 
**[[7mw0]] – hNUP93 174-819<br />
**[[7mw1]] – hNUP93 174-819 + NUP53 84-150<br />
 
*NUP96
 
**[[7nqa]] – fNUP96 + nanobody<br />
 
*NUP98
*NUP98
**[[3mmy]] – hNUP98 fragment+mRNA export factor <br />
**[[3mmy]] – hNUP98 fragment+mRNA export factor <br />
**[[2q5x]], [[2q5y]] – hNUP98 CTD<br />
**[[1ko6]], [[2q5x]], [[2q5y]] – hNUP98 CTD<br />
**[[1ko6]] – hNUP98 CTD<br />
**[[7q65]], [[7q66]], [[7q67]] – hNUP98 85-124 – Cryo EM<br />
**[[7now]] – fNUP98 + nanobody<br />
**[[7nq6]] – fNUP98 CTD <br />
 
*NUP100
*NUP100
**[[3nf5]] – NUP100 CTD – ''Candida glabrata''<br />
**[[3nf5]] – NUP100 CTD – ''Candida glabrata''<br />
*NUP107
*NUP107
**[[3i4r]], [[3cqc]], [[3cqg]] – hNUP107+NUP133<br />
 
**[[3cqc]], [[3cqg]], [[3i4r]] – hNUP107+NUP133<br />
 
*NUP116
*NUP116
**[[2aiv]] – yNUP116 CTD - NMR<br />
**[[2aiv]] – yNUP116 CTD - NMR<br />
*NUP120
*NUP120
**[[3f7f]], [[3h7n]], [[3hxr]] – yNUP120<br />
**[[3f7f]], [[3h7n]], [[3hxr]] – yNUP120<br />
**[[6x06]] – yNUP120 + nanobody<br />
*NUP133
*NUP133
**[[1xks]], [[4q9t]] – hNUP133 NTD<br />
**[[1xks]], [[4q9t]] – hNUP133 NTD<br />
**[[3kfo]] – yNUP133 CTD <br />
**[[3kfo]] – yNUP133 CTD <br />
**[[6x04]], [[6x05]] – yNUP133 + nanobody<br />
*NUP145
*NUP145
**[[3bg0]], [[3bg1]] – hNUP145+Sec13-related protein<br />
**[[3bg0]], [[3bg1]] – hNUP145+Sec13-related protein<br />
**[[3kep]], [[3kes]] – yNUP145 autoproteolytic domain<br />
**[[3kep]], [[3kes]] – yNUP145 autoproteolytic domain<br />
Line 70: Line 131:
**[[5hb5]] – CtNUP145 <br />
**[[5hb5]] – CtNUP145 <br />
**[[5hb6]] – CtNUP145 (mutant)<br />
**[[5hb6]] – CtNUP145 (mutant)<br />
*NUP152
*NUP152
**[[5tvz]] – yNUP152 Ig-like repeats - NMR<br />
**[[5tvz]] – yNUP152 Ig-like repeats - NMR<br />
*NUP153
*NUP153
**[[3gj3]], [[3gj4]], [[3gj5]], [[3gj6]], [[3gj7]], [[3gj8]], [[3ch5]] – hNUP153+RAN<br />
 
**[[7mo1]] – hNUP153 zinc finger 1 648-687 +RAN<br />
**[[3gj3]], [[3gj4]], [[3gj5]], [[3gj6]], [[3gj7]], [[3gj8]], [[3ch5]], [[7mo3]], [[7mo4]] – hNUP153 zinc finger 2 723-750 +RAN <br />
**[[7mo5]] – hNUP153 zinc finger 4 838-874 +RAN<br />
**[[2ebq]], [[2ebr]], [[2ebv]], [[2gqe]] - hNUP153 RANBD – NMR<br />
**[[2ebq]], [[2ebr]], [[2ebv]], [[2gqe]] - hNUP153 RANBD – NMR<br />
**[[2k0c]] – rNUP153 RANBD – NMR<br />
**[[2k0c]] – rNUP153 RANBD – NMR<br />
**[[7mo2]] - rNUP153 zinc finger 2 +RAN<br />
*NUP155
**[[7r1y]] – hNUP155 NTD 19-981 – Cryo EM<br />
**[[7eyf]] – hNUP155 CTD 864-1337 – Cryo EM<br />
**[[7eye]] – NUP155 19-863 – RVSV – Cryo EM<br />
**[[7eyq]] – NUP155 19-1069 – RVSV – Cryo EM<br />
*NUP157
*NUP157
**[[4mhc]] – hNUP157 NTD<br />
**[[4mhc]] – hNUP157 NTD<br />
*NUP159
*NUP159
**[[1xip]] – yNUP159 NTD<br />
**[[1xip]] – yNUP159 NTD<br />
**[[3rrm]] – yNUP159  residues 2-387 + NUP Gle1 + IP6 + ADP<br />
**[[3rrm]] – yNUP159  residues 2-387 + NUP Gle1 + IP6 + ADP<br />
*NUP170
*NUP170
**[[3i5p]], [[3i5q]] – yNUP170<br />
**[[3i5p]], [[3i5q]] – yNUP170<br />
**[[5hb1]] – CtNUP170 <br />
**[[5hb1]] – CtNUP170 <br />
Line 88: Line 169:
**[[5hb0]] – CtNUP170 (mutant) + CtNUP145 peptide<br />
**[[5hb0]] – CtNUP170 (mutant) + CtNUP145 peptide<br />
**[[5hax]] – CtNUP170 NTD + CtNUP53 peptide<br />
**[[5hax]] – CtNUP170 NTD + CtNUP53 peptide<br />
*NUP188
*NUP188
**[[5cwu]] – CtNUP192 tail domain<br />
 
**[[7wo9]] – yNUP188 – Cryo EM<br />
**[[5cwu]] – CtNUP188 tail domain<br />
**[[7mvw]] – CtNUP188 NTD 1-1134<br />
**[[7mvx]] – CtNUP188 + Nic96 peptide<br />
**[[7mvy]] – CtNUP188 + Nic96 peptide – Cryo EM<br />
**[[7mvz]] – CtNUP188 + NUP145 640-732 + Nic96 peptide – Cryo EM<br />
 
*NUP192
*NUP192
**[[4ifq]] – yNUP192<br />
**[[4ifq]] – yNUP192<br />
**[[5hb4]] – CtNUP192 <br />
**[[5hb4]] – CtNUP192 <br />
**[[7mvu]] – CtNUP192 1-1756 + Nic96 – Cryo EM<br />
**[[7mvt]] – CtNUP192 185-1756 + Nic96 <br />
**[[5cwv]] – CtNUP192 tail domain<br />
**[[5cwv]] – CtNUP192 tail domain<br />
*NUP214
*NUP214
**[[3fmo]], [[3fmp]], [[3fhc]] – hNUP214+dead-box helicase<br />
 
**[[3fhc]], [[3fmo]], [[3fmp]] – hNUP214+dead-box helicase<br />
**[[2oit]] – hNUP214 NTD<br />
**[[2oit]] – hNUP214 NTD<br />
*NUP358
*NUP358
**[[1z5s]] – hNUP358 IR1 domain+ubiquitin-conjugating enzyme+SMT3C+RAN CTD<br />
**[[1z5s]] – hNUP358 IR1 domain+ubiquitin-conjugating enzyme+SMT3C+RAN CTD<br />
**[[1xke]] - hNUP358 RANBD - NMR<br />
**[[1xke]] - hNUP358 RANBD - NMR<br />
**[[9b62]] - hNUP358 in nucleoporin exportin complex – Cryo EM<br />
*NUP1P
*NUP1P
**[[5owu]] – NUP1P+Kap95 complex<br />
**[[5owu]] – NUP1P+Kap95 complex<br />
*NUP2P
*NUP2P
**[[1un0]] – yNUP2P NTD+importrin α subunit<br />
 
**[[1un0]] – yNUP2P NTD+imporrin α subunit<br />
 
*NUP-NSP1
*NUP-NSP1
**[[1o6o]] – yNUP-NSP1 residues 497-608+importrin β subunit<br />
**[[1o6o]] – yNUP-NSP1 residues 497-608+importrin β subunit<br />
*NUP-CDC31
*NUP-CDC31
**[[2doq]], [[2gv5]] – yNUP-CDC31+SFI1P<br />
**[[2doq]], [[2gv5]] – yNUP-CDC31+SFI1P<br />
**[[3fwb]], [[3fwc]] - yNUP-CDC31+SAC3<br />
**[[3fwb]], [[3fwc]] - yNUP-CDC31+SAC3<br />


*NUP Gle1
*NUP Gle1
**[[3peu]], [[3pev]], [[3rrn]]– yNUP-Gle1 + ATP-dependent RNA helicase Dbp5 (mutant) +IP6<br />
**[[3peu]], [[3pev]], [[3rrn]]– yNUP-Gle1 + ATP-dependent RNA helicase Dbp5 (mutant) +IP6<br />
**[[6b4e]] – yNUP-Gle1 + NUP42 <br />
**[[6b4e]] – yNUP-Gle1 + NUP42 <br />
**[[6b4g]], [[6b4h]] – CtNUP-Gle1 + NUP Amo1 <br />
**[[6b4g]], [[6b4h]] – CtNUP-Gle1 + NUP Amo1 <br />
*NUP-Nic96
**[[2qx5]], [[2rfo]] – yNic96<br />
**[[6x07]] – yNic96 + nanobody<br />
**[[5hb2]] – CtNic96 <br />
**[[1gyb]] – NUP+yNTF2<br />
*NUP Pom34
**[[8t9l]] – yNUP-Pom34 + yNUP-Pom152 – Cryo EM<br />
*NUP-SEH1
**[[7uhy]], [[9lwf]], [[9oti]] – hNUP in GATOR2 complex – Cryo EM<br />
**[[9lvj]] – hNUP in GATOR2 complex + sestrin-2 – Cryo EM<br />
**[[9lvk]] – hNUP in GATOR2 complex + CASTOR1– Cryo EM<br />
**[[8adl]] – yNUP in SEA complex – Cryo EM<br />
**[[9h5k]] – yNUP in SEAC-EGOC complex – Cryo EM<br />


*Nuclear pore complex
*Nuclear pore complex


**[[5ijo]], [[5ijn]] – hNUP93 + NUP155 + NUP205 + NUP54 + NUP58 + NUP62 + NUP188 – Cryo EM<br />
**[[5ijn]], [[5ijo]], [[7peq]], [[7per]], [[7r5j]], [[7r5k]], [[8tj5]] – hNUP in pore complex – Cryo EM<br />
**[[5a9q]] – hNUP96 + NUP133 + NUP160 + NUP43 + NUP37 + NUP85 + NUP155 + NUP107 + Sec13 + Seh1 – Cryo EM<br />
**[[5a9q]] – hNUP96 + NUP133 + NUP160 + NUP43 + NUP37 + NUP85 + NUP155 + NUP107 + Sec13 + Seh1 – Cryo EM<br />
**[[6lk8]], [[7fik]], [[7tdz]], [[7vop]], [[7wb4]], [[7wkk]] – fNUP in ring complex – Cryo EM<br />
**[[9sob]] – NUP in pore complex – ''Arabidopsis thaliana'' - Cryo EM<br />
**[[7n84]], [[7n85]], [[7n9f]], [[7vci]], [[7woo]], [[7wot]] – yNUP in pore complex – Cryo EM<br />
**[[9hcj]] – NUP in pore complex – ''Dictyostelium discoideum'' - Cryo EM<br />


**[[2rfo]], [[2qx5]] – yNic96<br />
**[[5hb2]] – CtNic96 <br />
**[[1gyb]] – NUP+yNTF2<br />
}}
}}


[[Category:Topic Page]]
[[Category:Topic Page]]
Retrieved from "https://proteopedia.org/Nucleoporin_3D_structures"