Pilin 3D structures: Difference between revisions
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Michal Harel (talk | contribs) New page: == 3D Structures of pilin == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *pilin **3fhu – StPrePIL type ... |
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{{#tree:id=OrganizedByTopic|openlevels=0| | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
* | *Pilin | ||
**[[1kb7]], [[1kb8]] – PaPIL KB7 – ''Pseudomonas aeruginosa'' – NMR<br /> | |||
**[[1nil]], [[1nim]] - PaPIL PAK – NMR<br /> | |||
**[[1kb7]], [[1kb8]] – PaPIL KB7 – ''Pseudomonas aeruginosa'' – NMR< | |||
**[[1nil]], [[1nim]] - PaPIL PAK – NMR< | |||
**[[5vxy]] - PaPIL PAK – Cryo EM<br /> | **[[5vxy]] - PaPIL PAK – Cryo EM<br /> | ||
**[[1oqw]], [[1x6p]], [[1x6q]], [[1x6r]], [[1x6z]], [[1x6x]], [[1x6y]] - PaPIL PAK< | **[[1oqw]], [[1x6p]], [[1x6q]], [[1x6r]], [[1x6z]], [[1x6x]], [[1x6y]] - PaPIL PAK<br /> | ||
**[[2py0]] - PaPIL PAK (mutant) < | **[[2py0]] - PaPIL PAK (mutant) <br /> | ||
**[[1pan]], [[1pao]] - PaPIL PAO – NMR< | **[[1pan]], [[1pao]] - PaPIL PAO – NMR<br /> | ||
**[[1hpw]], [[1qve]], [[1rg0]], [[6bbk]] – PaPIL type I residues 29-150< | **[[9ewx]] - PaPIL PAO – Cryo EM<br /> | ||
**[[ | **[[1hpw]], [[1qve]], [[1rg0]], [[6bbk]], [[8v7p]] – PaPIL type I residues 29-150<br /> | ||
**[[ | **[[2j6r]], [[3gea]], [[3ggh]], [[3hlr]], [[4we2]] – EcPIL K88 – ''Escherichia coli''<br /> | ||
**[[2jty]], [[2n7h]], [[5nkt]], [[6r74]] – EcPIL type IA<br /> | |||
**[[ | **[[2m5g]], [[6ghms]] - EcPIL type IA – NMR<br /> | ||
**[[5oh0]], [[6c53]], [[6y7s]], [[8psv]], [[8ptu]], [[9ftt]], [[9fxa]], [[9iug]], [[9vkv]], [[9x67]] - EcPIL type IA – Cryo EM<br /> | |||
**[[ | |||
**[[3f83]], [[3f84]], [[3f85]] – EcPIL CFAE/CFAB<br /> | **[[3f83]], [[3f84]], [[3f85]] – EcPIL CFAE/CFAB<br /> | ||
**[[4y2l]], [[4y2n]] - EcPIL CFA/I subunit B<br /> | |||
**[[4y2o]] - EcPIL CFA/I subunit A+B<br /> | |||
**[[3vor]] - EcPIL CFA/III<br /> | **[[3vor]] - EcPIL CFA/III<br /> | ||
**[[9iuf]] - EcPIL CFA/III – Cryo EM<br /> | |||
**[[5flu]] - EcPIL PAP<br /> | **[[5flu]] - EcPIL PAP<br /> | ||
**[[4hji]] - EcPIL Cs1 subunit A<br /> | **[[4hji]] - EcPIL Cs1 subunit A<br /> | ||
**[[4b9i]], [[4b9j]] - EcPIL Cs6 subunit A<br /> | **[[4b9i]], [[4b9j]] - EcPIL Cs6 subunit A<br /> | ||
**[[4b9g]] - EcPIL Cs6 subunit B<br /> | **[[4b9g]] - EcPIL Cs6 subunit B<br /> | ||
**[[ | **[[9moq]], [[9mzt]] - EcPIL F – Cryo EM<br /> | ||
**[[ | **[[6ixy]] - PIL – ''Clostridium perfringens''<br /> | ||
**[[3rpk]], [[4s3l]] - majPIL type II – ''Streptococcus pneumoniae''<br /> | |||
**[[ | |||
**[[3sok]] - PIL – ''Dichelobacter nodosus''<br /> | **[[3sok]] - PIL – ''Dichelobacter nodosus''<br /> | ||
**[[6jbv]] - LrPIL – ''Lactobacillus rhamnosus''<br /> | **[[5f44]], [[5hdl]], [[5yxo]], [[6jbv]], [[6jch]], [[6jk7]] - LrPIL – ''Lactobacillus rhamnosus''<br /> | ||
**[[ | **[[5hts]], [[5j4m]], [[5z24]] - LrPIL (mutant) <br /> | ||
**[[ | **[[5fie]] - LrPIL SpaA N-terminal <br /> | ||
**[[5faa]], [[5fgr]], [[5fgs]] - LrPIL SpaA C-terminal <br /> | |||
**[[5hbb]] - LrPIL SpaA C-terminal (mutant) <br /> | |||
**[[5z0z]] - LrPIL SpaD (mutant) <br /> | |||
**[[5lp9]] - PIL – ''Shigella flexneri''<br /> | **[[5lp9]] - PIL – ''Shigella flexneri''<br /> | ||
**[[ | **[[6w8u]] - PIL – Pyrobaculum arsenaticum – Cryo EM<br /> | ||
**[[7ueg]], [[8dft]] - PIL – ''Pyrobaculum calidifontis'' – Cryo EM<br /> | |||
**[[6w8x]] - PIL – ''Saccharolobus solfataricus'' – Cryo EM<br /> | |||
**[[7jsv]] - PIL – ''Klebsiella pneumoniae'' – Cryo EM<br /> | |||
**[[6vk9]] - GsPILA – ''Geobacter sulfurreducens'' – Cryo EM<br /> | |||
**[[6olj]] - PILB – ''Geobacter metallirreducens'' – Cryo EM<br /> | |||
**[[6kmf]] – PIL type V – ''Porphyromonas gingivalis'' – Cryo EM<br /> | |||
**[[8sqx]] - CdPIL SpaB - NMR<br /> | |||
**[[7woi]] – PIL Spa2 – ''Corynebacterium glutamicum''<br /> | |||
**[[2co3]] – SePIL SafA – ''Salmonella enterica''<br /> | |||
**[[5leg]], [[5ler]], [[5lfb]] – SePIL F – Cryo EM<br /> | |||
**[[9vp2]], [[9vp3]], [[9vp4]], [[9vpe]] – SePIL H – Cryo EM<br /> | |||
**[[8dfu]] – PIL – ''Aeropyrum pernix'' – Cryo EM<br /> | |||
**[[9lab]] – SoPIL subunit MshA – ''Shewanella oneidensis'' – Cryo EM<br /> | |||
**[[9laa]] – SoPIL A – Cryo EM<br /> | |||
**[[9btq]] – PIL – ''Microcystis aeruginosa'' – Cryo EM<br /> | |||
**[[9p0a]] – NaPIL Tafi – ''Natrinema'' – Cryo EM<br /> | |||
**[[9jw8]] – PIL A – ''Burkholderia pseudomallei''<br /> | |||
**[[9ime]], [[9jr8]], [[9jrq]] – PIL A – ''Burkholderia thailandensis''<br /> | |||
*Pilin type IV | |||
**[[3fhu]] – StPrePIL type IV b residues 26-181 – ''Salmonella typhii''<br /> | |||
**[[1q5f]] - StPrePIL type IV b residues 26-181 – NMR<br /> | |||
**[[4ipu]], [[4ipv]], [[4noa]] – PaminPIL FimU<br /> | |||
**[[1ay2]], [[2pil]], [[2hi2]], [[2hil]] – NgPIL type IV – ''Neisseria gonorrhoeae''<br /> | |||
**[[2nba]] - minPIL ComP – ''Neisseri subflava''<br /> | |||
**[[5vxx]] - NgPIL type IV – Cryo EM<br /> | |||
**[[2opd]], [[2ope]], [[4v1j]], [[5v23]], [[5v0m]] - NmPIL type IV – ''Neisseria meningitis'' <br /> | |||
**[[2m3k]] - NmPIL type IV – NMR<br /> | |||
**[[5kua]] - NmPIL type IV – Cryo EM<br /> | |||
**[[5jw8]] – NmPIL type IV subunit PilE<br /> | |||
**[[8pfb]] - SsPIL type IV – Cryo EM<br /> | |||
**[[1dzo]] - PaPIL type IV globular domain (mutant) <br /> | |||
**[[3jyz]], [[3jzz]] - PaPIL type IV globular domain<br /> | |||
**[[8tum]] - PaPIL type IV PAO1 – Cryo EM<br /> | |||
**[[3s0t]] - EcPIL type IV<br /> | |||
**[[6bbt]], [[6bbw]], [[6n0a]] – SpmajPIL – ''Streptococcus pyogenes''<br /> | |||
**[[3gld]], [[3gle]] – SpmajPIL (mutant) | |||
**[[3klq]], [[5ttd]] - SpminPIL <br /> | |||
**[[3b2m]], [[3pf2]], [[3pg2]] - SamajPIL C-terminal – ''Streptococcus agalatiae''<br /> | |||
**[[3tvy]] - SamajPIL N3 domain 212-584<br /> | |||
**[[3txa]] - SamajPIL N2+N3 domain 48-729<br /> | |||
**[[3phs]] - SaminPIL <br /> | |||
**[[4bhr]], [[5g24]], [[5g25]] - TtPIL type IV – ''Thermus thermophilus''<br /> | |||
**[[6xxd]], [[6xxe]], [[8qqd]], [[8qqj]] - TtPIL type IV – Cryo EM<br /> | |||
**[[4ixj]], [[6t8s]] - majPIL type IV – ''Clostridium difficile''<br /> | |||
**[[6i2o]] – SsminPIL1 – ''Streprococcus sanguinis'' - NMR<br /> | |||
**[[7b7p]], [[7o5y]], [[7oa7]], [[7oa8]] – SsminPIL1<br /> | |||
**[[7ba2]] – SsminPIL1 (mutant)<br /> | |||
**[[2m7g]] - GsmajPILA – NMR<br /> | |||
**[[3hr6]], [[4hss]] - CdmajPIL – ''Corynebacterium diphtheriae''<br /> | |||
**[[4hsq]] - CdmajPIL D2+D3 domains<br /> | |||
**[[1oqv]], [[7w63]] - VcminPIL – ''Vibrio cholerae''<br /> | |||
**[[6mic]] - VcminPIL TcpB C-terminal<br /> | |||
**[[7qyi]] - minPIL FimT – ''Legionella pneumophila'' - NMR<br /> | |||
**[[8tj2]] – PIL type IV – ''Myxococcus xanthus'' – Cryo EM<br /> | |||
**[[3kpt]], [[3rkp]] - majPIL BcpA – ''Bacillus cereus'' <br /> | |||
**[[3soj]] – PIL type IV – ''Francisella tularensis''<br /> | |||
**[[8gi2]] – NaPIL type IV <br /> | |||
**[[4xa2]] - majPIL – ''Acinetobacter baumannii'' <br /> | |||
**[[4d40]] – SoPIL type IV <br /> | |||
*Pilin binary complex | *Pilin binary complex | ||
**[[3fhv]] - StPrePIL type IV b residues 26-181 + CFTR peptide<br /> | |||
**[[3fhv]] - StPrePIL type IV b residues 26-181 + CFTR peptide< | **[[2co6]], [[2co7]] – StPIL SafA + SafB chaperone<br /> | ||
**[[3gew]] - EcPIL K88 + chaperone protein FAEE< | **[[2co1]], [[2co2]] – StPIL SafA + SafA peptide<br /> | ||
**[[2cny]] – SePIL SafA + SafA peptide<br /> | |||
**[[3gew]] - EcPIL K88 + chaperone protein FAEE<br /> | |||
**[[4wei]] - EcPIL K88 + lactose<br /> | **[[4wei]] - EcPIL K88 + lactose<br /> | ||
**[[4weu]], [[4wem]], [[4wen]] - EcPIL K88 + llama single domain antibody<br /> | **[[4weu]], [[4wem]], [[4wen]] - EcPIL K88 + llama single domain antibody<br /> | ||
**[[2xg4]], [[2xg5]], [[2j2z]] - EcPIL PAP + chaperone protein PAPD< | **[[2xg4]], [[2xg5]], [[2j2z]] - EcPIL PAP + chaperone protein PAPD<br /> | ||
**[[2w07]], [[2uy6]], [[2uy7]] – EcPIL PAPF (mutant) + chaperone protein PAPD<br /> | **[[2w07]], [[2uy6]], [[2uy7]] – EcPIL PAPF (mutant) + chaperone protein PAPD<br /> | ||
**[[3sqb]], [[4dwh]] - EcPIL type 1A + chaperone protein FIMC<br /> | **[[3sqb]], [[4dwh]] - EcPIL type 1A + chaperone protein FIMC<br /> | ||
}} | **[[9fw9]], [[9fwb]], [[9fwz]] - EcPIL type 1A + FIMC + FIMD – Cryo EM<br /> | ||
**[[9fxb]] - EcPIL type 1A + FIMC + FIMD + FIMI – Cryo EM<br /> | |||
**[[9fx0]] - EcPIL type 1A + FIMF – Cryo EM<br /> | |||
**[[7w65]] - VcminPIL TcpB + TcpF<br /> | |||
**[[2cnz]], [[2co4]] – SePIL SafA + SafA peptide <br /> | |||
**[[7w64]] - VcminPIL TcpB + TcpF peptide<br /> | |||
**[[5ypz]] - EcminPIL CofB + CofJ peptide<br /> | |||
**[[8pij]], [[8piz]], [[8pjp]] - NmPIL type IV + nanobody – Cryo EM<br /> | |||
**[[8tuw]] - PaPIL type IV PAO1 + maturation protein – Cryo EM<br /> | |||
}} | |||
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