6ldk: Difference between revisions
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New page: '''Unreleased structure''' The entry 6ldk is ON HOLD Authors: Description: Category: Unreleased Structures |
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The | ==Isoleucyl-tRNA synthetase from Candida albicans complexed with a isoleucyl-adenylate== | ||
<StructureSection load='6ldk' size='340' side='right'caption='[[6ldk]], [[Resolution|resolution]] 2.90Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[6ldk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Candida_albicans_SC5314 Candida albicans SC5314]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LDK FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=ILE:ISOLEUCINE'>ILE</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ldk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ldk OCA], [https://pdbe.org/6ldk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ldk RCSB], [https://www.ebi.ac.uk/pdbsum/6ldk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ldk ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/Q59RI1_CANAL Q59RI1_CANAL] | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Pathogenic aminoacyl-tRNA synthetases (ARSs) are attractive targets for anti-infective agents because their catalytic active sites are different from those of human ARSs. Mupirocin is a topical antibiotic that specifically inhibits bacterial isoleucy-ltRNA synthetase (IleRS), resulting in a block to protein synthesis. Previous studies on Thermus thermophilus IleRS indicated that mupirocin-resistance of eukaryotic IleRS is primarily due to differences in two amino acids, His581 and Leu583, in the active site. However, without a eukaryotic IleRS structure, the structural basis for mupirocin-resistance of eukaryotic IleRS remains elusive. Herein, we determined the crystal structure of Candida albicans IleRS complexed with Ile-AMP at 2.9 A resolution. The largest difference between eukaryotic and prokaryotic IleRS enzymes is closure of the active site pocket by Phe55 in the HIGH loop; Arg410 in the CP core loop; and the second Lys in the KMSKR loop. The Ile-AMP product is lodged in a closed active site, which may restrict its release and thereby enhance catalytic efficiency. The compact active site also prevents the optimal positioning of the 9-hydroxynonanoic acid of mupirocin and plays a critical role in resistance of eukaryotic IleRS to anti-infective agents. | |||
Structural Basis for the Antibiotic Resistance of Eukaryotic Isoleucyl-tRNA Synthetase.,Chung S, Kim S, Ryu SH, Hwang KY, Cho Y Mol Cells. 2020 Apr 30;43(4):350-359. doi: 10.14348/molcells.2020.2287. PMID:32088946<ref>PMID:32088946</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
<div class="pdbe-citations 6ldk" style="background-color:#fffaf0;"></div> | |||
==See Also== | |||
*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]] | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Candida albicans SC5314]] | |||
[[Category: Large Structures]] | |||
[[Category: Cho Y]] | |||
[[Category: Chung S]] | |||
Latest revision as of 10:57, 22 November 2023
Isoleucyl-tRNA synthetase from Candida albicans complexed with a isoleucyl-adenylate
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