5hhj: Difference between revisions

Latest revision as of 07:36, 9 August 2023

Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P21 space group

Structural highlights

5hhj is a 2 chain structure with sequence from Roseburia intestinalis XB6B4. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 1.2Å
Ligands:	GLY, K, MPD, PO4, SIN
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

D4L313_9FIRM

Publication Abstract from PubMed

Group II introns are self-splicing ribozymes that are essential in many organisms, and they have been hypothesized to share a common evolutionary ancestor with the spliceosome. Although structural similarity of RNA components supports this connection, it is of interest to determine whether associated protein factors also share an evolutionary heritage. Here we present the crystal structures of reverse transcriptase (RT) domains from two group II intron-encoded proteins (maturases) from Roseburia intestinalis and Eubacterium rectale, obtained at 1.2-A and 2.1-A resolution, respectively. These domains are more similar in architecture to the spliceosomal Prp8 RT-like domain than to any other RTs, and they share substantial similarity with flaviviral RNA polymerases. The RT domain itself is sufficient for binding intron RNA with high affinity and specificity, and it is contained within an active RT enzyme. These studies provide a foundation for understanding structure-function relationships within group II intron-maturase complexes.

Crystal structures of a group II intron maturase reveal a missing link in spliceosome evolution.,Zhao C, Pyle AM Nat Struct Mol Biol. 2016 May 2. doi: 10.1038/nsmb.3224. PMID:27136328^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Zhao C, Pyle AM. Crystal structures of a group II intron maturase reveal a missing link in spliceosome evolution. Nat Struct Mol Biol. 2016 May 2. doi: 10.1038/nsmb.3224. PMID:27136328 doi:https://dx.doi.org/10.1038/nsmb.3224

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OCA

[1] Zhao C, Pyle AM. Crystal structures of a group II intron maturase reveal a missing link in spliceosome evolution. Nat Struct Mol Biol. 2016 May 2. doi: 10.1038/nsmb.3224. PMID:27136328 doi:https://dx.doi.org/10.1038/nsmb.3224

[1]

@@ Line 3: / Line 3: @@
 <StructureSection load='5hhj' size='340' side='right'caption='[[5hhj]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5hhj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Roseburia_intestinalis_xb6b4 Roseburia intestinalis xb6b4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HHJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HHJ FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5hhj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Roseburia_intestinalis_XB6B4 Roseburia intestinalis XB6B4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HHJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HHJ FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GLY:GLYCINE'>GLY</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SIN:SUCCINIC+ACID'>SIN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5hhk|5hhk]], [[5hhl|5hhl]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GLY:GLYCINE'>GLY</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SIN:SUCCINIC+ACID'>SIN</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RO1_37670 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=718255 Roseburia intestinalis XB6B4])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hhj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hhj OCA], [https://pdbe.org/5hhj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hhj RCSB], [https://www.ebi.ac.uk/pdbsum/5hhj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hhj ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hhj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hhj OCA], [http://pdbe.org/5hhj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hhj RCSB], [http://www.ebi.ac.uk/pdbsum/5hhj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hhj ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/D4L313_9FIRM D4L313_9FIRM]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 23: / Line 24: @@
 </StructureSection>
 [[Category: Large Structures]]
-[[Category: Roseburia intestinalis xb6b4]]
+[[Category: Roseburia intestinalis XB6B4]]
-[[Category: Pyle, A M]]
+[[Category: Pyle AM]]
-[[Category: Zhao, C]]
+[[Category: Zhao C]]
-[[Category: Group ii intron]]
-[[Category: Rna binding protein]]

5hhj: Difference between revisions

Latest revision as of 07:36, 9 August 2023

Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P21 space group

Structural highlights

Function

Publication Abstract from PubMed

References

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