5hma: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(One intermediate revision by the same user not shown)
Line 3: Line 3:
<StructureSection load='5hma' size='340' side='right'caption='[[5hma]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='5hma' size='340' side='right'caption='[[5hma]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5hma]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Magsa Magsa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HMA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HMA FirstGlance]. <br>
<table><tr><td colspan='2'>[[5hma]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Magnetospirillum_magneticum_AMB-1 Magnetospirillum magneticum AMB-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HMA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HMA FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.299&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5hm9|5hm9]]</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hma FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hma OCA], [https://pdbe.org/5hma PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hma RCSB], [https://www.ebi.ac.uk/pdbsum/5hma PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hma ProSAT]</span></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">amb0969 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=342108 MAGSA])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hma FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hma OCA], [http://pdbe.org/5hma PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hma RCSB], [http://www.ebi.ac.uk/pdbsum/5hma PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hma ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/MAMO_PARM1 MAMO_PARM1] Plays 2 roles; promotes magnetite nucleation/formation and activates the MamE protease (Probable). Despite its near conservation of a protease-like sequence, this is probably not a protease (Probable) (PubMed:26981620). Required in conjunction with MamP for proteolysis of at least MamE, itself and MamP (PubMed:26981620). May transport a solute that controls MamE's protease activity. May place individual iron atoms into the magnetite lattice (Probable).<ref>PMID:26981620</ref> <ref>PMID:20212111</ref> <ref>PMID:21414040</ref> <ref>PMID:26981620</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 24: Line 24:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Magsa]]
[[Category: Magnetospirillum magneticum AMB-1]]
[[Category: Hershey, D M]]
[[Category: Hershey DM]]
[[Category: Hurley, J H]]
[[Category: Hurley JH]]
[[Category: Komeili, A]]
[[Category: Komeili A]]
[[Category: Ren, X]]
[[Category: Ren X]]
[[Category: Biomineralization]]
[[Category: Hydrolase]]
[[Category: Magnetosome]]
[[Category: Pseudo-protease]]
[[Category: Trypsin]]

Latest revision as of 04:09, 21 November 2024

Crystal structure of MamO protease domain from Magnetospirillum magneticum (Ni bound form)

5hma, resolution 2.30Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA