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| <StructureSection load='294d' size='340' side='right'caption='[[294d]], [[Resolution|resolution]] 2.50Å' scene=''> | | <StructureSection load='294d' size='340' side='right'caption='[[294d]], [[Resolution|resolution]] 2.50Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
| <table><tr><td colspan='2'>[[294d]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=294D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=294D FirstGlance]. <br> | | <table><tr><td colspan='2'>[[294d]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=294D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=294D FirstGlance]. <br> |
| </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=294d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=294d OCA], [http://pdbe.org/294d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=294d RCSB], [http://www.ebi.ac.uk/pdbsum/294d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=294d ProSAT]</span></td></tr> | | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
| | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=294d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=294d OCA], [https://pdbe.org/294d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=294d RCSB], [https://www.ebi.ac.uk/pdbsum/294d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=294d ProSAT]</span></td></tr> |
| </table> | | </table> |
| <div style="background-color:#fffaf0;">
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| == Publication Abstract from PubMed ==
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| The cytosine-rich strand of the Tetrahymena telomere consists of multiple repeats of sequence d(AACCCC). We have solved the crystal structure of the crystalline repeat sequence at 2.5 A resolution. The adenines form two different and previously unknown clusters (A clusters) in orthogonal directions with their counterparts from other strands, each containing a total of eight adenines. The clusters appear to be stable aggregates held together by base stacking and three different base-pairing modes. Two different types of cytosine tetraplexes are found in the crystal. Each four-stranded complex is composed of two intercalated parallel-stranded duplexes pointing in opposite directions, with hemiprotonated cytosine-cytosine (C.C+) base pairs. The outermost C.C+base pairs are from the 5'-end of each strand in one cytosine tetraplex and from the 3'-end of each strand in the other. The A clusters and the cytosine tetraplexes form two alternating stacking patterns, creating continuous base stacking in two perpendicular directions along the x - and z -axes. The adenine clusters could be organizational motifs for macromolecular RNA.
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| Intercalated cytosine motif and novel adenine clusters in the crystal structure of the Tetrahymena telomere.,Cai L, Chen L, Raghavan S, Ratliff R, Moyzis R, Rich A Nucleic Acids Res. 1998 Oct 15;26(20):4696-705. PMID:9753739<ref>PMID:9753739</ref>
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| From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
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| </div>
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| <div class="pdbe-citations 294d" style="background-color:#fffaf0;"></div>
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| == References ==
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| <references/>
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
| [[Category: Cai, L]] | | [[Category: Cai L]] |
| [[Category: Chen, L]] | | [[Category: Chen L]] |
| [[Category: Moyzis, R]] | | [[Category: Moyzis R]] |
| [[Category: Raghavan, S]] | | [[Category: Raghavan S]] |
| [[Category: Ratliff, R]] | | [[Category: Ratliff R]] |
| [[Category: Rich, A]] | | [[Category: Rich A]] |
| [[Category: Adenine-cluster]]
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| [[Category: Base intercalated]]
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| [[Category: Continuous base stacking]]
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| [[Category: Dna]]
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| [[Category: Flipped-out base]]
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| [[Category: Parallel-stranded tetraplex]]
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| [[Category: Quadruple helix]]
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| [[Category: Unusual dna]]
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