6m6s: Difference between revisions

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'''Unreleased structure'''


The entry 6m6s is ON HOLD
==Crystal structure of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3) C-terminal domain with 5'-ppp 12-mer dsRNA==
<StructureSection load='6m6s' size='340' side='right'caption='[[6m6s]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[6m6s]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M6S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M6S FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m6s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m6s OCA], [https://pdbe.org/6m6s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m6s RCSB], [https://www.ebi.ac.uk/pdbsum/6m6s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m6s ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q93413_CAEEL Q93413_CAEEL]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
DRH-3 is critically involved in germline development and RNA interference (RNAi) facilitated chromosome segregation via the 22G-siRNA pathway in Caenorhabditis elegans. DRH-3 has similar domain architecture to RIG-I-like receptors (RLRs) and belongs to the RIG-I-like RNA helicase family. The molecular understanding of DRH-3 and its function in endogenous RNAi pathways remains elusive. In this study, we solved the crystal structures of the DRH-3 N-terminal domain (NTD) and the C-terminal domains (CTDs) in complex with 5'-triphosphorylated RNAs. The NTD of DRH-3 adopts a distinct fold of tandem caspase activation and recruitment domains (CARDs) structurally similar to the CARDs of RIG-I and MDA5, suggesting a signaling function in the endogenous RNAi biogenesis. The CTD preferentially recognizes 5'-triphosphorylated double-stranded RNAs bearing the typical features of secondary siRNA transcripts. The full-length DRH-3 displays unique structural dynamics upon binding to RNA duplexes that differ from RIG-I or MDA5. These features of DRH-3 showcase the evolutionary divergence of the Dicer and RLR family of helicases.


Authors: Li, K., Zheng, J., Wirawan, M., Xiong, Z., Fedorova, O., Griffin, P., Plyle, A., Luo, D.
Insights into the structure and RNA-binding specificity of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3).,Li K, Zheng J, Wirawan M, Trinh NM, Fedorova O, Griffin PR, Pyle AM, Luo D Nucleic Acids Res. 2021 Sep 27;49(17):9978-9991. doi: 10.1093/nar/gkab712. PMID:34403472<ref>PMID:34403472</ref>


Description: Crystal structure of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3) C-terminal domain with 5'-ppp 12-mer dsRNA
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
[[Category: Wirawan, M]]
<div class="pdbe-citations 6m6s" style="background-color:#fffaf0;"></div>
[[Category: Li, K]]
== References ==
[[Category: Fedorova, O]]
<references/>
[[Category: Griffin, P]]
__TOC__
[[Category: Plyle, A]]
</StructureSection>
[[Category: Zheng, J]]
[[Category: Caenorhabditis elegans]]
[[Category: Luo, D]]
[[Category: Large Structures]]
[[Category: Xiong, Z]]
[[Category: Synthetic construct]]
[[Category: Fedorova O]]
[[Category: Griffin P]]
[[Category: Li K]]
[[Category: Luo D]]
[[Category: Plyle A]]
[[Category: Wirawan M]]
[[Category: Xiong Z]]
[[Category: Zheng J]]
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