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<StructureSection load='5cx0' size='340' side='right'caption='[[5cx0]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
<StructureSection load='5cx0' size='340' side='right'caption='[[5cx0]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5cx0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanor Xanor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CX0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CX0 FirstGlance]. <br>
<table><tr><td colspan='2'>[[5cx0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_oryzae_pv._oryzae_KACC_10331 Xanthomonas oryzae pv. oryzae KACC 10331]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CX0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CX0 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=56L:5-(PROPAN-2-YL)-2-THIOXODIHYDROPYRIMIDINE-4,6(1H,5H)-DIONE'>56L</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5cp0|5cp0]], [[5cpd|5cpd]], [[5cvk|5cvk]], [[5cvp|5cvp]], [[5cvq|5cvq]], [[5cwx|5cwx]], [[5cwy|5cwy]], [[5cxj|5cxj]], [[5cy7|5cy7]], [[5cy8|5cy8]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=56L:5-(PROPAN-2-YL)-2-THIOXODIHYDROPYRIMIDINE-4,6(1H,5H)-DIONE'>56L</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">def, XOO1075 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=291331 XANOR])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cx0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cx0 OCA], [https://pdbe.org/5cx0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cx0 RCSB], [https://www.ebi.ac.uk/pdbsum/5cx0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cx0 ProSAT]</span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cx0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cx0 OCA], [http://pdbe.org/5cx0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cx0 RCSB], [http://www.ebi.ac.uk/pdbsum/5cx0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5cx0 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/Q5H3Z2_XANOR Q5H3Z2_XANOR]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]  
[https://www.uniprot.org/uniprot/Q5H3Z2_XANOR Q5H3Z2_XANOR] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Peptide deformylase]]
[[Category: Xanthomonas oryzae pv. oryzae KACC 10331]]
[[Category: Xanor]]
[[Category: Kang LW]]
[[Category: Kang, L W]]
[[Category: Ngo HPT]]
[[Category: Ngo, H P.T]]
[[Category: Fragment]]
[[Category: Hydrolase]]
[[Category: Metallopeptidase]]
[[Category: Peptide deformyase]]
[[Category: Xanthomona]]

Latest revision as of 09:09, 20 March 2024

Structure of Xoo1075, a peptide deformylase from Xanthomonas oryzae pv. oryzae, in complex with fragment 322

5cx0, resolution 2.50Å

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