5a8f: Difference between revisions
From Proteopedia
Jump to navigationJump to search
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 3: | Line 3: | ||
<SX load='5a8f' size='340' side='right' viewer='molstar' caption='[[5a8f]], [[Resolution|resolution]] 10.60Å' scene=''> | <SX load='5a8f' size='340' side='right' viewer='molstar' caption='[[5a8f]], [[Resolution|resolution]] 10.60Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[5a8f]] is a 3 chain structure with sequence from [ | <table><tr><td colspan='2'>[[5a8f]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Saffold_virus Saffold virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5A8F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5A8F FirstGlance]. <br> | ||
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 10.6Å</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5a8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a8f OCA], [https://pdbe.org/5a8f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5a8f RCSB], [https://www.ebi.ac.uk/pdbsum/5a8f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5a8f ProSAT]</span></td></tr> | |||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/E3TMG9_SAFV E3TMG9_SAFV] Affects membrane integrity and causes an increase in membrane permeability.[ARBA:ARBA00004017] Forms a primer, VPg-pU, which is utilized by the polymerase for the initiation of RNA chains.[ARBA:ARBA00002520] Forms an icosahedral capsid of pseudo T=3 symmetry with capsid proteins VP2 and VP3. Together they form an icosahedral capsid composed of 60 copies of each VP1, VP2, and VP3, with a diameter of approximately 300 Angstroms.VP4 lies on the inner surface of the protein shell formed by VP1, VP2 and VP3. All the three latter proteins contain a beta-sheet structure called beta-barrel jelly roll. VP1 is situated at the 12 fivefold axes, whereas VP2 and VP3 are located at the quasi-sixfold axes.[ARBA:ARBA00002469] Serves as membrane anchor via its hydrophobic domain.[ARBA:ARBA00003704] VP0 precursor is a component of immature procapsids.[ARBA:ARBA00002982] | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 21: | Line 24: | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Saffold virus]] | [[Category: Saffold virus]] | ||
[[Category: Kulich | [[Category: Kulich P]] | ||
[[Category: Lindberg | [[Category: Lindberg M]] | ||
[[Category: Mullapudi | [[Category: Mullapudi E]] | ||
[[Category: Novacek | [[Category: Novacek J]] | ||
[[Category: Palkova | [[Category: Palkova L]] | ||
[[Category: Plevka | [[Category: Plevka P]] | ||
[[Category: VanKuppeveld | [[Category: VanKuppeveld FJM]] | ||
