5gwf: Difference between revisions

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<StructureSection load='5gwf' size='340' side='right'caption='[[5gwf]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
<StructureSection load='5gwf' size='340' side='right'caption='[[5gwf]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5gwf]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Actfr Actfr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GWF OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5GWF FirstGlance]. <br>
<table><tr><td colspan='2'>[[5gwf]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Actinia_fragacea Actinia fragacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GWF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5GWF FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NGY:2-(ACETYLAMINO)-2-DEOXY-6-O-SULFO-ALPHA-D-GLUCOPYRANOSE'>NGY</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5gwf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gwf OCA], [http://pdbe.org/5gwf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gwf RCSB], [http://www.ebi.ac.uk/pdbsum/5gwf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gwf ProSAT]</span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NGY:2-(ACETYLAMINO)-2-DEOXY-6-O-SULFO-ALPHA-D-GLUCOPYRANOSE'>NGY</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5gwf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gwf OCA], [https://pdbe.org/5gwf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5gwf RCSB], [https://www.ebi.ac.uk/pdbsum/5gwf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5gwf ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/ACTPC_ACTFR ACTPC_ACTFR]] Pore-forming protein that forms cations-selective hydrophilic pores of around 1 nm and causes cardiac stimulation and hemolysis. Pore formation is a multi-step process that involves specific recognition of membrane sphingomyelin (but neither cholesterol nor phosphatidylcholine) using aromatic rich region and adjacent phosphocholine (POC) binding site, firm binding to the membrane (mainly driven by hydrophobic interactions) accompanied by the transfer of the N-terminal region to the lipid-water interface and finally pore formation after oligomerization of several monomers.<ref>PMID:19563820</ref>
[https://www.uniprot.org/uniprot/ACTPC_ACTFR ACTPC_ACTFR] Pore-forming protein that forms cations-selective hydrophilic pores of around 1 nm and causes cardiac stimulation and hemolysis. Pore formation is a multi-step process that involves specific recognition of membrane sphingomyelin (but neither cholesterol nor phosphatidylcholine) using aromatic rich region and adjacent phosphocholine (POC) binding site, firm binding to the membrane (mainly driven by hydrophobic interactions) accompanied by the transfer of the N-terminal region to the lipid-water interface and finally pore formation after oligomerization of several monomers.<ref>PMID:19563820</ref>  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Actfr]]
[[Category: Actinia fragacea]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Caaveiro, J M.M]]
[[Category: Caaveiro JMM]]
[[Category: Tsumoto, K]]
[[Category: Tsumoto K]]
[[Category: Actinoporin]]
[[Category: Carbohydrate-protein interaction]]
[[Category: Cytolysin]]
[[Category: Lipid-protein interaction]]
[[Category: Nanopore]]
[[Category: Pore-forming toxin]]
[[Category: Toxin]]

Latest revision as of 11:44, 2 August 2023

FraC with GlcNAc(6S) bound

5gwf, resolution 1.55Å

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