2z0i: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(One intermediate revision by the same user not shown)
Line 3: Line 3:
<StructureSection load='2z0i' size='340' side='right'caption='[[2z0i]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
<StructureSection load='2z0i' size='340' side='right'caption='[[2z0i]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2z0i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z0I OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2Z0I FirstGlance]. <br>
<table><tr><td colspan='2'>[[2z0i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z0I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Z0I FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Porphobilinogen_synthase Porphobilinogen synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.24 4.2.1.24] </span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2z0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z0i OCA], [http://pdbe.org/2z0i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2z0i RCSB], [http://www.ebi.ac.uk/pdbsum/2z0i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2z0i ProSAT], [http://www.topsan.org/Proteins/RSGI/2z0i TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2z0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z0i OCA], [https://pdbe.org/2z0i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2z0i RCSB], [https://www.ebi.ac.uk/pdbsum/2z0i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2z0i ProSAT], [https://www.topsan.org/Proteins/RSGI/2z0i TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/HEM2_MOUSE HEM2_MOUSE] Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 13: Line 15:
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z0/2z0i_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z0/2z0i_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
Line 24: Line 26:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Lk3 transgenic mice]]
[[Category: Mus musculus]]
[[Category: Porphobilinogen synthase]]
[[Category: Kawazoe M]]
[[Category: Kawazoe, M]]
[[Category: Kishishita S]]
[[Category: Kishishita, S]]
[[Category: Murayama K]]
[[Category: Murayama, K]]
[[Category: Shirouzu M]]
[[Category: Structural genomic]]
[[Category: Takemoto C]]
[[Category: Shirouzu, M]]
[[Category: Terada T]]
[[Category: Takemoto, C]]
[[Category: Wang H]]
[[Category: Terada, T]]
[[Category: Xie Y]]
[[Category: Wang, H]]
[[Category: Yokoyama S]]
[[Category: Xie, Y]]
[[Category: Yokoyama, S]]
[[Category: Dehydratase]]
[[Category: Lyase]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Rsgi]]
[[Category: Tetrapyrrole biosynthesis]]

Latest revision as of 05:38, 17 October 2024

Crystal Structure of 5-aminolevulinic acid dehydratase (ALAD) from Mus musculus

2z0i, resolution 3.20Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA