Jmol/Useful one-liners: Difference between revisions
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<jmol><jmolButton><text>zoom visible</text><script>zoom 0</script></jmolButton></jmol> | <jmol><jmolButton><text>zoom visible</text><script>zoom 0</script></jmolButton></jmol> | ||
set perspectiveDepth ON | |||
Perspective depth shows close objects larger than those far away. Orthoscopic view shows them at the same size. When looking at crystal symmetry, orthoscopic is sometimes preferable. Try it for <scene name='82/824000/Contacts/4'>cellulose structure</scene>. | |||
<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>set perspectiveDepth ON</scriptWhenChecked> | |||
<scriptWhenUnchecked>set perspectiveDepth OFF</scriptWhenUnchecked> | |||
<checked>true</checked> | |||
<text>Perspective depth</text> | |||
</jmolCheckbox> | |||
</jmol> | |||
moveto quaternion (61 and mainchain) | |||
Orients residue 61 in a specific way. If you use the same command on another amino acid residue, the C-alpha atom and its bonds will be oriented in the same way. This makes it easier to compare side chain conformations. | |||
</StructureSection> | </StructureSection> | ||
