Jmol/Useful one-liners: Difference between revisions
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set perspectiveDepth ON | set perspectiveDepth ON | ||
Perspective depth shows close objects larger than those far away. Orthoscopic view shows them at the same size. When looking at crystal symmetry, orthoscopic is sometimes preferable. | Perspective depth shows close objects larger than those far away. Orthoscopic view shows them at the same size. When looking at crystal symmetry, orthoscopic is sometimes preferable. Try it for <scene name='82/824000/Contacts/4'>cellulose structure</scene>. | ||
<jmol> | <jmol> | ||
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</jmolCheckbox> | </jmolCheckbox> | ||
</jmol> | </jmol> | ||
moveto quaternion (61 and mainchain) | |||
Orients residue 61 in a specific way. If you use the same command on another amino acid residue, the C-alpha atom and its bonds will be oriented in the same way. This makes it easier to compare side chain conformations. | |||
</StructureSection> | </StructureSection> | ||
