1rcq: Difference between revisions

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<StructureSection load='1rcq' size='340' side='right'caption='[[1rcq]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
<StructureSection load='1rcq' size='340' side='right'caption='[[1rcq]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1rcq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RCQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1RCQ FirstGlance]. <br>
<table><tr><td colspan='2'>[[1rcq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RCQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RCQ FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DLY:D-LYSINE'>DLY</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DLY:D-LYSINE'>DLY</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1sft|1sft]], [[1bdo|1bdo]], [[1epv|1epv]], [[1l6f|1l6f]], [[2sfp|2sfp]]</div></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rcq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rcq OCA], [https://pdbe.org/1rcq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rcq RCSB], [https://www.ebi.ac.uk/pdbsum/1rcq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rcq ProSAT]</span></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dadx ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alanine_racemase Alanine racemase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.1 5.1.1.1] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1rcq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rcq OCA], [http://pdbe.org/1rcq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rcq RCSB], [http://www.ebi.ac.uk/pdbsum/1rcq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1rcq ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/ALR2_PSEAE ALR2_PSEAE]] Isomerizes L-alanine to D-alanine which is then oxidized to pyruvate by DadA.<ref>PMID:10977898</ref>
[https://www.uniprot.org/uniprot/ALR2_PSEAE ALR2_PSEAE] Isomerizes L-alanine to D-alanine which is then oxidized to pyruvate by DadA.<ref>PMID:10977898</ref>  
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rc/1rcq_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rc/1rcq_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Alanine racemase]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Benedik, M]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Dvorak, A]]
[[Category: Benedik M]]
[[Category: Im, H]]
[[Category: Dvorak A]]
[[Category: Krause, K L]]
[[Category: Im H]]
[[Category: Magueres, P Le]]
[[Category: Krause KL]]
[[Category: Strych, U]]
[[Category: Le Magueres P]]
[[Category: Alpha-beta barrel]]
[[Category: Strych U]]
[[Category: Beta-structure for c-terminal domain]]
[[Category: Internal/external aldimine form]]
[[Category: Isomerase]]
Retrieved from "https://proteopedia.org/1rcq"