Cavity programs: Difference between revisions
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===I. Cavities=== | ===I. Cavities=== | ||
These programs identify any cavities between atoms of the macromolecule, or pockets beneath a smoothed macromolecular surface, that are larger than the probe diameter. '''No starting position need be specified'''. | These programs identify any cavities between atoms of the macromolecule, or pockets beneath a smoothed macromolecular surface, that are larger than the probe diameter. '''No starting position need be specified'''. | ||
*[[#AVP|AVP]] | |||
*[[#CASTp|CASTp]] | *[[#CASTp|CASTp]] | ||
*[[#Jmol|Jmol]] Cavities as isosurfaces. | *[[#Jmol|Jmol]] Cavities as isosurfaces. | ||
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First released December, 2020. | First released December, 2020. | ||
==See Also== | |||
*[[Jmol/Cavities pockets and tunnels]] | |||
*[[PACUPP: Pockets And Cavities Using Pseudoatoms in Proteins]] | |||
*[[Jmol/Depth from surface]] | |||
*[[SARS-CoV-2 spike protein fusion transformation]] which discusses the spike protein cavity used as an example above. | |||
==References== | ==References== | ||
<references /> | <references /> | ||
