7dri: Difference between revisions

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New page: '''Unreleased structure''' The entry 7dri is ON HOLD Authors: Haiyan, G., Jinchuan, Z. Description: SspE_CTD_41658 Category: Unreleased Structures Category: Haiyan, G [[Categor...
 
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'''Unreleased structure'''


The entry 7dri is ON HOLD
==Structure of SspE_CTD_41658==
<StructureSection load='7dri' size='340' side='right'caption='[[7dri]], [[Resolution|resolution]] 2.72&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[7dri]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_scabiei Streptomyces scabiei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DRI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DRI FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.72&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7dri FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7dri OCA], [https://pdbe.org/7dri PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7dri RCSB], [https://www.ebi.ac.uk/pdbsum/7dri PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7dri ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/A0A100JVX1_STRSC A0A100JVX1_STRSC]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
DNA phosphorothioate (PT) modification, with a nonbridging phosphate oxygen substituted by sulfur, represents a widespread epigenetic marker in prokaryotes and provides protection against genetic parasites. In the PT-based defense system Ssp, SspABCD confers a single-stranded PT modification of host DNA in the 5'-C(PS)CA-3' motif and SspE impedes phage propagation. SspE relies on PT modification in host DNA to exert antiphage activity. Here, structural and biochemical analyses reveal that SspE is preferentially recruited to PT sites mediated by the joint action of its N-terminal domain (NTD) hydrophobic cavity and C-terminal domain (CTD) DNA binding region. PT recognition enlarges the GTP-binding pocket, thereby increasing GTP hydrolysis activity, which subsequently triggers a conformational switch of SspE from a closed to an open state. The closed-to-open transition promotes the dissociation of SspE from self PT-DNA and turns on the DNA nicking nuclease activity of CTD, enabling SspE to accomplish self-nonself discrimination and limit phage predation, even when only a small fraction of modifiable consensus sequences is PT-protected in a bacterial genome.


Authors: Haiyan, G., Jinchuan, Z.
Nicking mechanism underlying the DNA phosphorothioate-sensing antiphage defense by SspE.,Gao H, Gong X, Zhou J, Zhang Y, Duan J, Wei Y, Chen L, Deng Z, Wang J, Chen S, Wu G, Wang L Nat Commun. 2022 Nov 9;13(1):6773. doi: 10.1038/s41467-022-34505-0. PMID:36351933<ref>PMID:36351933</ref>


Description: SspE_CTD_41658
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
[[Category: Haiyan, G]]
<div class="pdbe-citations 7dri" style="background-color:#fffaf0;"></div>
[[Category: Jinchuan, Z]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Streptomyces scabiei]]
[[Category: Chen S]]
[[Category: Haiyan G]]
[[Category: Jinchuan Z]]
[[Category: Wang L]]
[[Category: Wu G]]
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