User:Karsten Theis/Animation course: Difference between revisions

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Karsten Theis (talk | contribs)
Editor, Macro, Print3D
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Karsten Theis (talk | contribs)
Editor, Macro, Print3D
4,602 edits
No edit summary
 
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===Recall ligand position===
===Recall ligand position===
Clicking on the links below will restore the ligand position (scene0 is the original position in the binding pocket):
Clicking on the links below will restore the ligand position (scene0 is the original position in the binding pocket):
<jmol><jmolLink><script>ROTATE COMPARE {BF0} @{temp0} -2</script><text>retrieve state 0</text></jmolLink></jmol>
<jmol><jmolLink><script>ROTATE COMPARE {BF0} @{temp0} -2</script><text>retrieve state 0</text></jmolLink></jmol>


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To animate, click below
To animate, click below


<jmol><jmolLink><script>set picking none</script><text>turn of ligand dragging</text></jmolLink></jmol>
<jmol><jmolLink><script>set picking none</script><text>turn off ligand dragging</text></jmolLink></jmol>


<jmol><jmolLink><script>ROTATE COMPARE {BF0} @{temp3} -2; ROTATE COMPARE {BF0} @{temp2} -2; ROTATE COMPARE {BF0} @{temp1} -2; ROTATE COMPARE {BF0} @{temp0} -2;</script><text>bind</text></jmolLink></jmol>
<jmol><jmolLink><script>ROTATE COMPARE {BF0} @{temp3} -2; ROTATE COMPARE {BF0} @{temp2} -2; ROTATE COMPARE {BF0} @{temp1} -2; ROTATE COMPARE {BF0} @{temp0} -2;</script><text>bind</text></jmolLink></jmol>
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==Morph a helix==
==Morph a helix==


Here is the SARS-2 <scene name='82/824516/Spike/3'>spike protein</scene>.
Here is the SARS-2 <scene name='82/824516/Spike/5'>spike protein</scene>.


(<jmol><jmolLink><script>delete not (:A or :X); model 1; select protein; backbone only; select :X; cartoon on; select :X; set picking dragselected; set allowrotateselected; temp0 = {:X}.xyz.all</script><text>click to prepare</text></jmolLink></jmol>)
(<jmol><jmolLink><script>delete chain="B"; delete chain="C"; model 1; select protein; backbone only; select chain="X"; cartoon on; select 912, 982; spacefill 5.0; select 1.2; color red; model 0; select chain="X"; set picking dragselected; set allowrotateselected; temp0 = {chain="X"}.xyz.all</script><text>click to prepare</text></jmolLink></jmol>)


Click and drag on the ligand to move it. Alt-click and drag on the ligand to rotate it. Click and drag away from the ligand to adjust the view. To store each consecutive ligand position, consecutively click on the links below:  
Click and drag on the ligand to move it. Alt-click and drag on the ligand to rotate it. Click and drag away from the ligand to adjust the view. To store each consecutive ligand position, consecutively click on the links below:  
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<jmol><jmolLink><script>set picking none</script><text>turn of ligand dragging</text></jmolLink></jmol>
<jmol><jmolLink><script>set picking none</script><text>turn of ligand dragging</text></jmolLink></jmol>


<jmol><jmolLink><script>ROTATE COMPARE :X} @{temp3} -2; ROTATE COMPARE {:X} @{temp2} -2; ROTATE COMPARE {:X} @{temp1} -2; ROTATE COMPARE {:X} @{temp0} -2;</script><text>bind</text></jmolLink></jmol>
<jmol><jmolLink><script>ROTATE COMPARE {:X} @{temp3} -2; ROTATE COMPARE {:X} @{temp2} -2; ROTATE COMPARE {:X} @{temp1} -2; ROTATE COMPARE {:X} @{temp0} -2;</script><text>bind</text></jmolLink></jmol>


<jmol><jmolLink><script>ROTATE COMPARE {:X} @{temp1} -2; ROTATE COMPARE {:X} @{temp2} -2; ROTATE COMPARE {:X} @{temp3} -2; ROTATE COMPARE {:X} @{temp4} -2;</script><text>dissociate</text></jmolLink></jmol>
<jmol><jmolLink><script>ROTATE COMPARE {:X} @{temp1} -2; ROTATE COMPARE {:X} @{temp2} -2; ROTATE COMPARE {:X} @{temp3} -2; ROTATE COMPARE {:X} @{temp4} -2;</script><text>dissociate</text></jmolLink></jmol>
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