1gdj: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
 
(One intermediate revision by the same user not shown)
Line 3: Line 3:
<StructureSection load='1gdj' size='340' side='right'caption='[[1gdj]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='1gdj' size='340' side='right'caption='[[1gdj]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1gdj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/European_yellow_lupine European yellow lupine]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1lh4 1lh4] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2lh4 2lh4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GDJ FirstGlance]. <br>
<table><tr><td colspan='2'>[[1gdj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lupinus_luteus Lupinus luteus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GDJ FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gdj OCA], [https://pdbe.org/1gdj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gdj RCSB], [https://www.ebi.ac.uk/pdbsum/1gdj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gdj ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gdj OCA], [https://pdbe.org/1gdj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gdj RCSB], [https://www.ebi.ac.uk/pdbsum/1gdj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gdj ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/LGB2_LUPLU LGB2_LUPLU]] Provides oxygen to the bacteroids. This role is essential for symbiotic nitrogen fixation.  
[https://www.uniprot.org/uniprot/LGB2_LUPLU LGB2_LUPLU] Provides oxygen to the bacteroids. This role is essential for symbiotic nitrogen fixation.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 14: Line 15:
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/1gdj_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/1gdj_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
Line 35: Line 36:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: European yellow lupine]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Harutyunyan, E]]
[[Category: Lupinus luteus]]
[[Category: Kuranova, I]]
[[Category: Harutyunyan E]]
[[Category: Safonova, T]]
[[Category: Kuranova I]]
[[Category: Oxygen transport]]
[[Category: Safonova T]]
Retrieved from "https://proteopedia.org/1gdj"