4kgd: Difference between revisions

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<StructureSection load='4kgd' size='340' side='right'caption='[[4kgd]], [[Resolution|resolution]] 1.06&Aring;' scene=''>
<StructureSection load='4kgd' size='340' side='right'caption='[[4kgd]], [[Resolution|resolution]] 1.06&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4kgd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lacpj Lacpj]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KGD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4KGD FirstGlance]. <br>
<table><tr><td colspan='2'>[[4kgd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactiplantibacillus_plantarum_JDM1 Lactiplantibacillus plantarum JDM1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KGD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4KGD FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=TPP:THIAMINE+DIPHOSPHATE'>TPP</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.06&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[4fee|4fee]]</div></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=TPP:THIAMINE+DIPHOSPHATE'>TPP</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">JDM1_2870, pox5 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=644042 LACPJ])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Pyruvate_oxidase Pyruvate oxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.3.3 1.2.3.3] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4kgd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kgd OCA], [https://pdbe.org/4kgd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4kgd RCSB], [https://www.ebi.ac.uk/pdbsum/4kgd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4kgd ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4kgd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kgd OCA], [https://pdbe.org/4kgd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4kgd RCSB], [https://www.ebi.ac.uk/pdbsum/4kgd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4kgd ProSAT]</span></td></tr>
</table>
</table>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Lacpj]]
[[Category: Lactiplantibacillus plantarum JDM1]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Pyruvate oxidase]]
[[Category: Neumann P]]
[[Category: Neumann, P]]
[[Category: Tittmann K]]
[[Category: Tittmann, K]]
[[Category: Carbanion]]
[[Category: Oxidation-reduction]]
[[Category: Oxidoreductase]]
[[Category: Reaction intermediate]]
[[Category: Structure activity relationship]]
[[Category: Thiamine diphosphate]]
[[Category: Umpolung]]

Latest revision as of 15:59, 20 September 2023

High-resolution crystal structure of pyruvate oxidase from L. plantarum in complex with phosphate

4kgd, resolution 1.06Å

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