Human lactoferrin: Difference between revisions
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Undo revision 3437870 by Karsten Theis (Talk) |
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The structure of LF<sub>N</sub> undergoes a dramatic conformational change upon iron binding. Upon iron binding, the two domains of LF<sub>N</sub> undergo a rigid 54.1º rotation about a <scene name='Sandbox_Reserved_302/Hinge/1'>screw axis</scene> that passes through Thr90 and Pro251.<ref name="gerstein">PMID:8230220</ref> | The structure of LF<sub>N</sub> undergoes a dramatic conformational change upon iron binding. Upon iron binding, the two domains of LF<sub>N</sub> undergo a rigid 54.1º rotation about a <scene name='Sandbox_Reserved_302/Hinge/1'>screw axis</scene> that passes through Thr90 and Pro251.<ref name="gerstein">PMID:8230220</ref> | ||
<jmol> | To visualize the <jmol> | ||
<jmolLink> | <jmolLink> | ||
<script>load files "=1CB6" "=1LCF";model 0;cartoon only;domain2 = {(92-249 or 1092-1249)}; | <script>load files "=1CB6" "=1LCF";model 0;cartoon only;domain2 = {(92-249 or 1092-1249)};select domain2 and _C;color green; | ||
structures = [{1.1}, {2.1}]; | structures = [{1.1}, {2.1}]; | ||
domains = [[{not domain2},{not domain2}, {alpha and not domain2 and not altloc="B"}], [{domain2}, {(91,1091,250,1250) and *.CA}, {alpha and domain2 and not altloc="B"}],]; | domains = [[{not domain2},{not domain2}, {alpha and not domain2 and not altloc="B"}], [{domain2}, {(91,1091,250,1250) and *.CA}, {alpha and domain2 and not altloc="B"}],];moveto 1.0 { 880 471 63 56.8} 132.25 0.0 0.0 {2.646000000000001 15.972 -7.2715} 63.954979842981245 {0 0 0} 0 0 0 3.0 0.0 0.0; | ||
script "https://proteopedia.org/wiki/images/a/a2/Storymorph.spt";superimpose(structures,domains,1);model 1;delay 0.5;model 2;delay 0.5;model 1; | script "https://proteopedia.org/wiki/images/a/a2/Storymorph.spt";superimpose(structures,domains,1);model 1;delay 0.5;model 2;delay 0.5;model 1; | ||
</script> | </script> | ||
<text>domain motion</text> | <text>domain motion</text> | ||
</jmolLink> | </jmolLink> | ||
</jmol> | </jmol>, we first load the two structures and superimpose them. You can choose a viewing orientation before pressing the morph button, which will visualize the conformational change from structure 1CB6 to 1LCF and back again<ref>The [[Jmol/Storymorph|Storymorph Jmol scripts]] creates the interpolated coordinates of the morph on the fly.</ref> | ||
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<jmol> | <jmol> | ||
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morph(15,structures,domains)</script> | morph(15,structures,domains)</script> | ||
<text>Morph</text> | <text>Morph</text> | ||
</jmolButton> | |||
</jmol> <jmol> | |||
<jmolButton> | |||
<script>select protein;spacefill only;</script> | |||
<text>spacefill</text> | |||
</jmolButton> | </jmolButton> | ||
</jmol> | </jmol> | ||
=Function & Application= | =Function & Application= | ||
Latest revision as of 15:56, 11 August 2021
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References
Page originally authored by Christian Axen
Proteopedia Page Contributors and Editors (what is this?)
Andrea Gorrell, Karsten Theis, Michal Harel, Alexander Berchansky
