Lipase lid morph: Difference between revisions

(5 intermediate revisions by the same user not shown)

Line 16:

*<scene name='Lipase_lid_morph/Lightseagreen_hinge/5'>Spacefilling morph</scene> ({{Template:ColorKey_Polar}}, {{Template:ColorKey_Hydrophobic}}, <font color='orange'><b>catalytic triad: Ser209, Glu341, and His449</b></font><ref name='2states1994' />).

~~A second~~ morph<ref>This is a ~~[[Jmol/Storymorph|~~rigid body morph]] based on the ~~superoposition~~ in PDB file is [[Image:1TRH_1LPM.pdb]].</ref> ~~shows~~ a <~~scene name='49~~/~~493694~~/~~Storymorph~~/1'>~~different path~~</~~scene~~> ~~between the same initial and final experimental structures.~~

=== Rigid body morph ===

An <scene name='49/493694/Storymorph/1'>alternate morph</scene> shows a different path between the same initial and final experimental structures <ref>This is a rigid body morph based on the superposition in PDB file [[Image:1TRH_1LPM.pdb]]. It is created by the [[Jmol/Storymorph|Storymorph script]] on the fly.</ref>. The position of the inhibitor in the 1lpm structure is shown throughout; it would clash with the conformation of the lid in the 1trh structures, showing that closed lid and inhibitor binding are mutually exclusive.

<jmol>

domain2 = {(75-85)};

model 2;

structures = [{1.2}, {1.1}];

domains = [

[{protein and not domain2}],

[{domain2}, {(74,86) and *.CA}],

];

morph_palindrome = 1;

morph(15,structures,domains);</script>

<text>Run alternate morph</text>

</jmolButton>

</jmol>

==See Also==

Lipase lid morph: Difference between revisions

Navigation menu

Page actions

Page actions

Personal tools

Navigation

Search

Tools

@@ Line 16: / Line 16: @@
 *<scene name='Lipase_lid_morph/Lightseagreen_hinge/5'>Spacefilling morph</scene> ({{Template:ColorKey_Polar}}, {{Template:ColorKey_Hydrophobic}}, <font color='orange'><b>catalytic triad: Ser209, Glu341, and His449</b></font><ref name='2states1994' />).
-A second morph<ref>This is a [[Jmol/Storymorph|rigid body morph]] based on the superoposition in PDB file is [[Image:1TRH_1LPM.pdb]].</ref> shows a <scene name='49/493694/Storymorph/1'>different path</scene> between the same initial and final experimental structures.
+=== Rigid body morph ===
+An <scene name='49/493694/Storymorph/1'>alternate morph</scene> shows a different path between the same initial and final experimental structures <ref>This is a rigid body morph based on the superposition in PDB file [[Image:1TRH_1LPM.pdb]]. It is created by the [[Jmol/Storymorph|Storymorph script]] on the fly.</ref>. The position of the inhibitor in the 1lpm structure is shown throughout; it would clash with the conformation of the lid in the 1trh structures, showing that closed lid and inhibitor binding are mutually exclusive.
+<jmol>
+  <jmolButton>
+    <script>script "https://proteopedia.org/wiki/images/a/a2/Storymorph.spt";
+domain2 = {(75-85)};
+model 2;
+structures = [{1.2}, {1.1}];
+domains = [
+  [{protein and not domain2}],
+  [{domain2}, {(74,86) and *.CA}],
+];
+morph_palindrome = 1;
+morph(15,structures,domains);</script>
+    <text>Run alternate morph</text>
+  </jmolButton>
+</jmol>
 ==See Also==