1jde: Difference between revisions

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<StructureSection load='1jde' size='340' side='right'caption='[[1jde]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
<StructureSection load='1jde' size='340' side='right'caption='[[1jde]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1jde]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacteroides_symbiosus"_stevens_1956 "bacteroides symbiosus" stevens 1956]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JDE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JDE FirstGlance]. <br>
<table><tr><td colspan='2'>[[1jde]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_symbiosum Clostridium symbiosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JDE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JDE FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1dik|1dik]], [[2dik|2dik]], [[1ggo|1ggo]]</div></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PODK ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1512 "Bacteroides symbiosus" Stevens 1956])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Pyruvate,_phosphate_dikinase Pyruvate, phosphate dikinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.9.1 2.7.9.1] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jde OCA], [https://pdbe.org/1jde PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jde RCSB], [https://www.ebi.ac.uk/pdbsum/1jde PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jde ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jde OCA], [https://pdbe.org/1jde PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jde RCSB], [https://www.ebi.ac.uk/pdbsum/1jde PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jde ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/PPDK_CLOSY PPDK_CLOSY]] Catalyzes the reversible phosphorylation of pyruvate and phosphate. In E.histolytica and C.symbiosus, PPDK functions in the direction of ATP synthesis.  
[https://www.uniprot.org/uniprot/PPDK_CLOSY PPDK_CLOSY] Catalyzes the reversible phosphorylation of pyruvate and phosphate. In E.histolytica and C.symbiosus, PPDK functions in the direction of ATP synthesis.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jd/1jde_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jd/1jde_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacteroides symbiosus stevens 1956]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Pyruvate, phosphate dikinase]]
[[Category: Dunaway-Mariano D]]
[[Category: Dunaway-Mariano, D]]
[[Category: Herzberg O]]
[[Category: Herzberg, O]]
[[Category: Huang K]]
[[Category: Huang, K]]
[[Category: Kapadia G]]
[[Category: Kapadia, G]]
[[Category: Martin BM]]
[[Category: Martin, B M]]
[[Category: McGuire M]]
[[Category: McGuire, M]]
[[Category: Wei M]]
[[Category: Wei, M]]
[[Category: Ye D]]
[[Category: Ye, D]]
[[Category: Kinase]]
[[Category: Nucleotide binding site mutant]]
[[Category: Phosphotransferase]]
[[Category: Transferase]]
Retrieved from "https://proteopedia.org/1jde"