1cff: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
New page: left|200px<br /> <applet load="1cff" size="450" color="white" frame="true" align="right" spinBox="true" caption="1cff" /> '''NMR SOLUTION STRUCTURE OF A COMPLEX OF CALM...
 
OCA (talk | contribs)
No edit summary
 
(20 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1cff.gif|left|200px]]<br />
<applet load="1cff" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1cff" />
'''NMR SOLUTION STRUCTURE OF A COMPLEX OF CALMODULIN WITH A BINDING PEPTIDE OF THE CA2+-PUMP'''<br />


==Overview==
==NMR SOLUTION STRUCTURE OF A COMPLEX OF CALMODULIN WITH A BINDING PEPTIDE OF THE CA2+-PUMP==
The three-dimensional structure of the complex between calmodulin (CaM), and a peptide corresponding to the N-terminal portion of the CaM-binding, domain of the plasma membrane calcium pump, the peptide C20W, has been, solved by heteronuclear three-dimensional nuclear magnetic resonance (NMR), spectroscopy. The structure calculation is based on a total of 1808, intramolecular NOEs and 49 intermolecular NOEs between the peptide C20W, and calmodulin from heteronuclear-filtered NOESY spectra and a, half-filtered experiment, respectively. Chemical shift differences between, free Ca(2+)-saturated CaM and its complex with C20W as well as the, structure calculation reveal that C20W binds solely to the C-terminal half, of CaM. In addition, comparison of the methyl resonances of the nine, assigned methionine residues of free Ca(2+)-saturated CaM with those of, the CaM/C20W complex revealed a significant difference between the, N-terminal and the C-terminal domain; i.e., resonances in the N-terminal, domain of the complex were much more similar to those reported for free, CaM in contrast to those in the C-terminal half which were significantly, different not only from the resonances of free CaM but also from those, reported for the CaM/M13 complex. As a consequence, the global structure, of the CaM/C20W complex is unusual, i.e., different from other peptide, calmodulin complexes, since we find no indication for a collapsed, structure. The fine modulation in the peptide protein interface shows a, number of differences to the CaM/M13 complex studied by Ikura et al., [Ikura, M., Clore, G. M., Gronenborn, A. M., Zhu, G., Klee, C. B., and, Bax, A. (1992) Science 256, 632-638]. The unusual binding mode to only the, C-terminal half of CaM is in agreement with the biochemical observation, that the calcium pump can be activated by the C-terminal half of CaM alone, [Guerini, D., Krebs, J., and Carafoli, E. (1984) J. Biol. Chem. 259, 15172-15177].
<StructureSection load='1cff' size='340' side='right'caption='[[1cff]]' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1cff]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Xenopus_laevis Xenopus laevis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CFF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CFF FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1cff FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cff OCA], [https://pdbe.org/1cff PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1cff RCSB], [https://www.ebi.ac.uk/pdbsum/1cff PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cff ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/CALM1_XENLA CALM1_XENLA] Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cf/1cff_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1cff ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The three-dimensional structure of the complex between calmodulin (CaM) and a peptide corresponding to the N-terminal portion of the CaM-binding domain of the plasma membrane calcium pump, the peptide C20W, has been solved by heteronuclear three-dimensional nuclear magnetic resonance (NMR) spectroscopy. The structure calculation is based on a total of 1808 intramolecular NOEs and 49 intermolecular NOEs between the peptide C20W and calmodulin from heteronuclear-filtered NOESY spectra and a half-filtered experiment, respectively. Chemical shift differences between free Ca(2+)-saturated CaM and its complex with C20W as well as the structure calculation reveal that C20W binds solely to the C-terminal half of CaM. In addition, comparison of the methyl resonances of the nine assigned methionine residues of free Ca(2+)-saturated CaM with those of the CaM/C20W complex revealed a significant difference between the N-terminal and the C-terminal domain; i.e., resonances in the N-terminal domain of the complex were much more similar to those reported for free CaM in contrast to those in the C-terminal half which were significantly different not only from the resonances of free CaM but also from those reported for the CaM/M13 complex. As a consequence, the global structure of the CaM/C20W complex is unusual, i.e., different from other peptide calmodulin complexes, since we find no indication for a collapsed structure. The fine modulation in the peptide protein interface shows a number of differences to the CaM/M13 complex studied by Ikura et al. [Ikura, M., Clore, G. M., Gronenborn, A. M., Zhu, G., Klee, C. B., and Bax, A. (1992) Science 256, 632-638]. The unusual binding mode to only the C-terminal half of CaM is in agreement with the biochemical observation that the calcium pump can be activated by the C-terminal half of CaM alone [Guerini, D., Krebs, J., and Carafoli, E. (1984) J. Biol. Chem. 259, 15172-15177].


==About this Structure==
NMR solution structure of a complex of calmodulin with a binding peptide of the Ca2+ pump.,Elshorst B, Hennig M, Forsterling H, Diener A, Maurer M, Schulte P, Schwalbe H, Griesinger C, Krebs J, Schmid H, Vorherr T, Carafoli E Biochemistry. 1999 Sep 21;38(38):12320-32. PMID:10493800<ref>PMID:10493800</ref>
1CFF is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Xenopus_laevis Xenopus laevis] with CA as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Calcium-transporting_ATPase Calcium-transporting ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.8 3.6.3.8] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1CFF OCA].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
NMR solution structure of a complex of calmodulin with a binding peptide of the Ca2+ pump., Elshorst B, Hennig M, Forsterling H, Diener A, Maurer M, Schulte P, Schwalbe H, Griesinger C, Krebs J, Schmid H, Vorherr T, Carafoli E, Biochemistry. 1999 Sep 21;38(38):12320-32. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10493800 10493800]
</div>
[[Category: Calcium-transporting ATPase]]
<div class="pdbe-citations 1cff" style="background-color:#fffaf0;"></div>
 
==See Also==
*[[Calmodulin 3D structures|Calmodulin 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Protein complex]]
[[Category: Large Structures]]
[[Category: Xenopus laevis]]
[[Category: Xenopus laevis]]
[[Category: Carafoli, E.]]
[[Category: Carafoli E]]
[[Category: Diener, A.]]
[[Category: Diener A]]
[[Category: Elshorst, B.]]
[[Category: Elshorst B]]
[[Category: Foersterling, H.]]
[[Category: Foersterling H]]
[[Category: Griesinger, C.]]
[[Category: Griesinger C]]
[[Category: Hennig, M.]]
[[Category: Hennig M]]
[[Category: Krebs, J.]]
[[Category: Krebs J]]
[[Category: Maurer, M.]]
[[Category: Maurer M]]
[[Category: Schmid, H.]]
[[Category: Schmid H]]
[[Category: Schulte, P.]]
[[Category: Schulte P]]
[[Category: Schwalbe, H.]]
[[Category: Schwalbe H]]
[[Category: Vorherr, T.]]
[[Category: Vorherr T]]
[[Category: CA]]
[[Category: c20w]]
[[Category: calmodulin]]
[[Category: nmr]]
[[Category: plasma membrane calcium pump]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 16:21:16 2007''