1fny: Difference between revisions

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[[Image:1fny.gif|left|200px]]


<!--
==LEGUME LECTIN OF THE BARK OF ROBINIA PSEUDOACACIA.==
The line below this paragraph, containing "STRUCTURE_1fny", creates the "Structure Box" on the page.
<StructureSection load='1fny' size='340' side='right'caption='[[1fny]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1fny]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Robinia_pseudoacacia Robinia pseudoacacia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FNY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FNY FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.81&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
{{STRUCTURE_1fny|  PDB=1fny |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fny FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fny OCA], [https://pdbe.org/1fny PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fny RCSB], [https://www.ebi.ac.uk/pdbsum/1fny PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fny ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/LCB1_ROBPS LCB1_ROBPS]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fn/1fny_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fny ConSurf].
<div style="clear:both"></div>


'''LEGUME LECTIN OF THE BARK OF ROBINIA PSEUDOACACIA.'''
==See Also==
 
*[[Agglutinin 3D structures|Agglutinin 3D structures]]
 
__TOC__
==Overview==
</StructureSection>
The structure of the bark lectin RPbAI (isoform A4) from Robinia pseudoacacia has been determined by protein crystallography both in the free form and complexed with N-acetylgalactosamine. The free form is refined at 1.80 A resolution to an R-factor of 18.9% whereas the complexed structure has an R-factor of 19.7% at 2.05 A resolution. Both structures are compared to each other and to other available legume lectin structures. The polypeptide chains of the two structures exhibit the characteristic legume lectin tertiary fold. The quaternary structure resembles that of the Phaseolus vulgaris lectin, the soybean agglutinin, and the Dolichos biflorus lectin, but displays some unique features leading to the extreme stability of this lectin.
[[Category: Large Structures]]
 
==About this Structure==
1FNY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Robinia_pseudoacacia Robinia pseudoacacia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FNY OCA].
 
==Reference==
Structure of a legume lectin from the bark of Robinia pseudoacacia and its complex with N-acetylgalactosamine., Rabijns A, Verboven C, Rouge P, Barre A, Van Damme EJ, Peumans WJ, De Ranter CJ, Proteins. 2001 Sep 1;44(4):470-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11484224 11484224]
[[Category: Robinia pseudoacacia]]
[[Category: Robinia pseudoacacia]]
[[Category: Single protein]]
[[Category: Barre A]]
[[Category: Barre, A.]]
[[Category: De Ranter CJ]]
[[Category: Damme, E J.Van.]]
[[Category: Peumans WJ]]
[[Category: Peumans, W J.]]
[[Category: Rabijns A]]
[[Category: Rabijns, A.]]
[[Category: Rouge P]]
[[Category: Ranter, C J.De.]]
[[Category: Van Damme EJ]]
[[Category: Rouge, P.]]
[[Category: Verboven C]]
[[Category: Verboven, C.]]
[[Category: Jelly roll]]
[[Category: Legume lectin]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May  2 16:33:23 2008''
Retrieved from "https://proteopedia.org/1fny"