Test160122: Difference between revisions

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<StructureSection load='3i3f' size='350' side='right' scene='90/901530/Cv/1' caption=''>
<StructureSection load='3i3f' size='350' side='right' scene='90/901530/Cv/14' caption=''>


Giardiasis or traveler's diarrhea can be fatal to the young, elderly, or immunocompromised. The Seattle Structural Genomics Center for Infectious Disease (SSGCID) has determined the structures of potential drug targets from ''Giardia lamblia''. Some of these proteins are hypothetical proteins that share < 30% sequence identity or less to proteins with known structure.  
'''23/01/22'''
 
*<scene name='90/901530/Cv/24'>Tusual, color is chosen same as atom after clicking on atom</scene> - after that, the label color is remaining white
*Everything is OK: <scene name='90/901530/Cv/30'>Similar to Tusual, color is chosen same as atom before clicking on atom</scene>
 
*<scene name='90/901530/Cv/26'>Trot</scene>
*<scene name='90/901530/Cv/27'>Trock</scene>
*<scene name='90/901530/Cv/28'>Twobble</scene>
 
 
*<scene name='90/901530/Cv1/1'>Surfacenew</scene>
*<scene name='90/901530/Cv1/2'>Surfacenew1</scene>
*<scene name='90/901530/Cv1/3'>Morph_Loop_6models</scene><jmol><jmolButton>
<script>if (_animating); anim pause;set echo bottom left; color echo white; font echo 20 sansserif;echo Animation Paused; else; anim resume; set echo off;endif;</script>
<text>Stop Animation</text>
</jmolButton></jmol>
 
*<scene name='90/901530/Cv1/4'>Morph_Palindrom_2models</scene><jmol><jmolButton>
<script>if (_animating); anim pause;set echo bottom left; color echo white; font echo 20 sansserif;echo Animation Paused; else; anim resume; set echo off;endif;</script>
<text>Stop Animation</text>
</jmolButton></jmol>
 
 
*<scene name='90/901530/L22s/2'>Mutation L22S (copy saved in present page): </scene>
<jmol>
<jmolLink>
  <script>
    animation on; animation mode loop; frame 1 1 play; animation off; frame 1; select [LEU]22;color selectionHalos green;selectionHalos on;
  </script>
<text>Wild type </text> 
</jmolLink>
</jmol>
conformation and
<jmol>
<jmolLink>
  <script>
    animation on; animation mode loop; frame 2 2 play; animation off; frame 2; select [SER]22;color selectionHalos red;selectionHalos on;
  </script>
  <text>mutation.
  </text>
</jmolLink>
</jmol>
Click here to see the
<jmol>
<jmolLink>
  <script>
    animation off; frame all; select [SER]22;color selectionHalos red;selectionHalos on;
  </script>
  <text>mutated and wild type
  </text>
</jmolLink>
</jmol> residues together, and an
<jmol>
<jmolLink>
  <script>
  animation on; animation mode loop; frame play; select [SER]22;color selectionHalos red;selectionHalos on;
  </script>
  <text>animation
  </text>
</jmolLink>
</jmol> between the two states. Putative new hydrogen bonds were added.
<jmol><jmolButton>
<script>if (_animating); anim pause;set echo bottom left; color echo white; font echo 20 sansserif;echo Animation Paused; else; anim resume; set echo off;endif;</script>
<text>Stop Animation</text>
</jmolButton></jmol>
 
*<scene name='90/901530/Cv1/5'>From uploaded file</scene>
 
 
 
---------
*<scene name='90/901530/Cv/4'>160122was_with_labels/now180122_without_labels</scene>
 
*<scene name='90/901530/Cv/16'>180122saved_today_with_labels/in_text_without_labels</scene>
*<scene name='90/901530/Cv/17'>180122saved_today/should_be_simple_copy_of_previous_scene_without_rotation</scene>
*<scene name='90/901530/Cv/11'>Surface</scene>
*<scene name='90/901530/Cv/19'>Te</scene>
*<scene name='90/901530/Cv/23'>Terot</scene>
*<scene name='90/901530/Cv/22'>Tewobble</scene>
*<scene name='90/901530/Cv/3'>Test1</scene>
*<scene name='90/901530/Cv/3'>Test1</scene>
*<scene name='90/901530/Cv/4'>Te2</scene>


[[Image:Figure3newa.png|left|450px|thumb|Despite the low sequence similarity the hypothetical protein is a prototypical YjgF/YER057c/UK114 endoribonuclease]]
*<scene name='90/901530/Cv/5'>Te3</scene>
*<scene name='90/901530/Cv/10'>T8</scene> <jmol><jmolButton>
<script>if (_animating); anim pause;set echo bottom left; color echo white; font echo 20 sansserif;echo Animation Paused; else; anim resume; set echo off;endif;</script>
<text>Stop Animation</text>
</jmolButton></jmol>
*<scene name='90/901530/Cv/12'>T7</scene> <jmol><jmolButton>
<script>if (_animating); anim pause;set echo bottom left; color echo white; font echo 20 sansserif;echo Animation Paused; else; anim resume; set echo off;endif;</script>
<text>Stop Animation</text>
</jmolButton></jmol>
*<scene name='90/901530/Cv/8'>T7a</scene> <jmol><jmolButton>
<script>if (_animating); anim pause;set echo bottom left; color echo white; font echo 20 sansserif;echo Animation Paused; else; anim resume; set echo off;endif;</script>
<text>Stop Animation</text>
</jmolButton></jmol>
*<scene name='75/751104/L22s/7'>Mutation L22S: </scene>
<jmol>
<jmolLink>
  <script>
    animation on; animation mode loop; frame 1 1 play; animation off; frame 1; select [LEU]22;color selectionHalos green;selectionHalos on;
  </script>
<text>Wild type </text> 
</jmolLink>
</jmol>
conformation and
<jmol>
<jmolLink>
  <script>
    animation on; animation mode loop; frame 2 2 play; animation off; frame 2; select [SER]22;color selectionHalos red;selectionHalos on;
  </script>
  <text>mutation.
  </text>
</jmolLink>
</jmol>
Click here to see the
<jmol>
<jmolLink>
  <script>
    animation off; frame all; select [SER]22;color selectionHalos red;selectionHalos on;
  </script>
  <text>mutated and wild type
  </text>
</jmolLink>
</jmol> residues together, and an
<jmol>
<jmolLink>
  <script>
  animation on; animation mode loop; frame play; select [SER]22;color selectionHalos red;selectionHalos on;
  </script>
  <text>animation
  </text>
</jmolLink>
</jmol> between the two states. Putative new hydrogen bonds were added.
<jmol><jmolButton>
<script>if (_animating); anim pause;set echo bottom left; color echo white; font echo 20 sansserif;echo Animation Paused; else; anim resume; set echo off;endif;</script>
<text>Stop Animation</text>
</jmolButton></jmol>
 
------------------------------
[[Image:Figure3newt.png|left|450px|thumb|NEW: Despite the low sequence similarity the hypothetical protein is a prototypical YjgF/YER057c/UK114 endoribonuclease]]
{{Clear}}
{{Clear}}
[[Image:Trimercomparison.png|left|450px|thumb|test]]
[[Image:Trimercomparison1.png|left|450px|thumb|NEW]]
{{Clear}}
{{Clear}}
</StructureSection>
</StructureSection>
== References ==
== References ==
<references/>
<references/>

Latest revision as of 14:53, 23 January 2022

Drag the structure with the mouse to rotate

References

Proteopedia Page Contributors and Editors (what is this?)

Alexander Berchansky, Jaime Prilusky

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